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Collective Imagination

Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Digital World Biology).

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July 31, 2006

Will the real rock star scientist please stand up?

Category: Miscellany

I've been fortunate, living in Seattle, to hear talks from many people that my colleagues and co-bloggers might consider to be rock stars - people like Mary-Claire King, Nancy Wexler,...

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July 28, 2006

Digital Biology Friday: That was no ape, that was my brother!

Category: Digital Biology Fridays

We've had a good time in the past few last weeks, identifying unknown sequences and learning our way around a GenBank nucleotide record. To some people, it seems that this...

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July 26, 2006

Trade publications in biology teaching

Category: Classic Digital Bio

Trade publications; such as catalogs, technical bulletins, and web sites; are a valuable source of information for students in biotechnology-related courses. Not only do catalogs and technical publications provide current...

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July 25, 2006

Inquiring as to the sequence

Category: Science education

One of my favorite experiments, in our biotech program at Seattle Central Community College, was when my students sequenced promoters that they had cloned from E. coli . I liked...

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July 24, 2006

Sequencing the campus at the Johns Hopkins University

Category: Classic Digital Bio

A few years ago, the General Biology students at the Johns Hopkins University began to interrogate the unseen world. During this semester-long project, they study the ecosystems of the Homewood...

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July 21, 2006

Digital Biology Friday: It's still Friday!

Category: Digital Biology Fridays

"Hey Rocky, watch me pull a rabbit out of my hat!" I realized that I should add just a bit more information to last answer on gene identification, so here...

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Digital Biology Friday: What was that gene anyway?

Category: Digital Biology Fridays

Welcome back! If you've just joined us, we're in the middle of a quest to find the identity of an unknown nucleotide sequence. To summarize our results so far, we...

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July 14, 2006

Digital Biology Friday: Those BLASTed results!

Category: Digital Biology Fridays

Last week, we embarked on an adventure with BLAST. BLAST, short for Basic Alignment Search Tool, is a collection of programs, written by scientists at the NCBI (1) that are...

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July 12, 2006

If you build it, will they come?

Category: Science education

Many regions in the United States, and the world for that matter, are seeking to entice biotech companies to relocate. As Lorraine Ruff and David Gabrilska describe in their Genetic...

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July 10, 2006

It's still a DNA puzzle, but this is the answer

Category: molecular structures

Although, I certainly didn't believe it. Truly in nature, it can be described as nonpareil. With all the years that I've heard (or taught) that all DNA is antiparallel, it...

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