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My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Digital World Biology).

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« Antibiotics au naturale? | Main | EMBL Online Symposium: No travel costs! Attend for free! »

What's that taste?

Category: Ask a Science BloggerHumorMicrobiology
Posted on: November 29, 2006 12:31 PM, by Sandra Porter

This wasn't in the lab, but it was an accident, and it was funny later on.

Normally, I wouldn't think twice about storing bacterial cultures in a refrigerator. After all, bacteria on a petri plate, inside of a plastic bag, are kind of stuck. They can't get out of the plates, and even if they did, they certainly can't crawl out of a plastic bag.

I thought soil bacteria, on agar plates, were mostly harmless.

I was wrong.

When my husband was finishing graduate school, he brought home some agar plates that he had streaked, with different Streptomyces species, so that he could photograph them for his thesis defence. Streptomcyetes grow fairly slow, but when you store plates at room temperature, the agar tends to dry out and the cultures don't look as nice. So, he put the agar plates, with the Streptomyces cultures, in a plastic bag and stuck them in our refrigerator.

You can see one of his agar plates here with five different species of Streptomycetes. All of these bacteria normally live in the soil and make antibiotics. Some, like Streptomyces azureus, also make colorful pigments as you can see on this plate. They're lovely bacteria.

There they were were sitting in our refrigerator at home, waiting to be photographed.

One morning I came downstairs for breakfast and made myself some hot buttered toast.

A few minutes later I was frantically spitting toast, crumbs, and butter out of my mouth.

Yuck! It was dirt! The butter tasted like dirt!

I yelled at Todd to come downstairs and told him about the butter. We agreed that we would not store bacterial cultures in our refrigerator anymore and immediately started sniffing other items in the fridge.

Cream cheese? Smells like dirt.

Cream? Dirt.

Peanut Butter? Dirt

Cheese? Dirt, again.

Yogurt? More dirt.

I don't remember how many things we tossed in the garbage that day. Any substance with any kind of fat had picked up the smell and taste of soil.

We were both puzzled, though. What was this stuff that made everything taste like dirt? It must have been volatile and soluble in lipids, but what was it?

It was humic acid. Dirt smells like dirt because of humic acid, and humic acid is made by, you guessed it, Streptomyces.

Comments

I.....I cant help it, I have to quote Cowboy Bebop: "Never open the fridge."

Posted by: Baratos | November 29, 2006 4:25 PM

How long did it take to get the smell out of the fridge itself ?
It would have spoiled my breakfast too !

Posted by: Elizabeth | November 30, 2006 12:29 AM

Really, I don't mean any offense, but wasn't this a pretty stupid thing to do? One of the most basic lab safety SOPs we were taught (and which I taught in turn, when I was an instructor) was that you don't store food and biological specimens in the same places. We had separate refrigerators and sinks for those things. And weren't the agar plates parafilmed?

Ah well, I guess these things are more obvious in hindsight. It's a good thing nobody was poisoned.

Posted by: Carlo | November 30, 2006 7:46 AM

Elizabeth,
We cleaned the refrigerator pretty well after that incident!

Carlo,
You're right about storing specimens and food in different areas. That is a good practice. I thought Streptomycetes would be okay in our refrigerator because they do not cause human diseases and we had the plates were wrapped with parafilm and stored in a plastic bag. It just didn't occur to us that they would make volatile compounds with a nasty taste.

I should point out, sometimes there isn't a great distinction between a "biological specimen" and the stuff that we eat. Just last week, we brought a dead turkey home (biological specimen?) and stored it in our refrigerator until we cooked it on Thanksgiving. You can see pictures of it under the microscope.

The fact is, everything in a refrigerator contains microbes - either on the surface of the container, or inside the food. It's even part of product marketing. The people who sell Acidophilus milk, some kinds of yogurt, and Hefeweisen beer, all make a big deal out of including live cultures. So it's impossible to completely separate food from bacteria unless you sterilize the food, and we usually don't do that unless we're canning vegetables. So, I'm not overly paranoid where bacteria are concerned unless they're bacteria that are known to be a problem.

Posted by: Sandra Porter | November 30, 2006 12:41 PM

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