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Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Geospiza Education).

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    July 31, 2007

    Careers in biotechnology, part IV: the tip of the informatics iceberg

    Category: Bioinformatics

    I don't usually blog about work for wide variety of reasons. But, last week, since I wanted to write about bioinformatics software companies, I broke with tradition and wrote about Geospiza as an example. Naturally, I got some feedback about this. Some people liked it, but one of the most opinionated people said that I had given the software engineering...

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    July 30, 2007

    A visit to the galaxy zoo

    Category: Science education

    Amateur astronomers unite! The pros want your help! image from Astronomy Picture of the Day, Credit: NASA, ESA, A. Aloisi (STScI / ESA), Hubble Heritage (STScI / AURA) - ESA/Hubble Collaboration I learned about this from the Washington Science Teachers Assocation. Galaxy Zoo and the Sloan Digital Sky Survey are looking for your help in sorting out different galaxies. It's...

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    Wednesday evenings at the genome

    Category: Genetics & Molecular Biology

    If you're in Seattle this week, and you're not going to the zoo concert on Wednesday night, you might enjoy this lecture series from the UW Genome Sciences department. We missed the first two talks because of travel, but our college-age daughter and her friend persuaded us to go last Weds. and hear Debbie Nickerson talk about genetics and drugs....

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    July 28, 2007

    Conventions, authorship, and fields of study

    Category: Bioinformatics

    What happens when authors play by different rules?

    Read on »

    July 27, 2007

    Digital Biology Friday: More puzzling structures

    Category: Digital Biology Fridays

    I've had some requests for some more molecular puzzles since the last one that I posted (see A DNA puzzle ). One person liked it so much he even blogged about it. So, here's one for you to chew on over the weekend. This puzzle is a variation of an activity in Exploring DNA Structure, a CD/lab book that I...

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    July 25, 2007

    Professor Steve Steve bears all at Virginia Tech

    Category: Humor

    Not content with his recent exploits in human experimentation and cavorting with Plosites in San Francisco, Professor Steve Steve jetted across the country once again, last week, hitting both both Blacksburg, VA and Seattle, WA, and creating pandemonium wherever he went. And raising the question - how does he get back and forth across the coast so quickly? Will you...

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    July 24, 2007

    Careers in biotechnology, part III: Life in a bioinformatics software company

    Category: Bioinformatics

    What do people do in bioinformatics software companies?

    Read on »

    July 23, 2007

    Bug hunting is a BLAST

    Category: Bioinformatics

    Software testing and the scientific method.

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    July 18, 2007

    Kudos to my commenters!

    Category: Bioinformatics

    If you missed reading some of the comments on yesterday's post, I highly recommend that you go back and catch up. I especially want you all to pay close attention to the comments from Deepak and Keith Robison. Like me, they work in industry and not in an ivory tower. Unlike me, they actually work in the biotech industry, while...

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    July 17, 2007

    Careers in biotechnology, part II bioinformatics

    Category: Biotechnology

    Where does bioinformatics fit in the biotech food chain?

    Read on »

    July 16, 2007

    Teaching with the new BLAST

    Category: Bioinformatics

    Some things I like, some were surprises.

    Read on »

    July 15, 2007

    The signs are everywhere

    Category: Humor

    At the Seattle Art Museum's new sculpture garden, we can read all the signs....

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    Professor Steve Steve caught experimenting with human subjects!

    Category: Humor

    It's okay, they're science teachers.

    Read on »

    July 13, 2007

    It's still a DNA puzzle, but this is the answer

    Category: molecular structures

    This DNA is nonpareil.

    Read on »

    July 12, 2007

    Updates to the BLAST for beginners tutorial

    Category: Science education

    BLAST has gotten harder.

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    July 11, 2007

    Careers in biotechnology, part I.

    Category: Biotechnology

    What do people in biotechnology do on the job? What can students do with a science degree once they've finished college? Some answers can be found at the "Life Sciences Central web site. Created by the Workforce Development Council of Seattle-King County, this is a wonderful resource for anyone who's considering biotechnology for a potential career. My favorite part of...

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    July 10, 2007

    A DNA puzzle

    Category: molecular structures

    It's a pair of bases, but something's not quite right.

    Read on »

    July 9, 2007

    Gadget Lust

    Category: Bioinformatics

    Viewing chromatogram trace files on iPhone.

    Read on »

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