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Collective Imagination

Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Digital World Biology).

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October 31, 2007

Spontaneous human combustion and the chemistry of ghosts

Category: Chemistry & Biochemistry

When purified, it glows with an unearthly light. You can't go "chemical free" and try to escape it. It's part of our bones and it forms the backbone of our...

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October 30, 2007

Win fabulous prizes! (by helping schools)

Category: Science education

I missed my chance to get my own DonorsChoose challenge together, but that doesn't mean that you have to miss your chance to contribute and, of course:   WIN...

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October 29, 2007

Cultural confusion: white papers vs. peer review

Category: Science culture

What's the difference?

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October 28, 2007

Digging up the dirt on campus bacteria: how do we know if we have good data?

Category: Bioinformatics

Metagenomics is a field where people interrogate the living world by isolating and sequencing nucleic acids. Since all living things have DNA, and viruses have either DNA or RNA, we...

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October 27, 2007

Metagenomics, biomes, and dirt: separating good data from bad

Category: Bioinformatics

Sequencing the dirt: see how it's done

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October 26, 2007

Playing in the dirt: metagenomics on the JHU campus

Category: Bioinformatics

We have lots of DNA samples from bacteria that were isolated from dirt. Now it's time to our own metagenomics project and figure out what they are. Our class project...

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October 25, 2007

Metagenomics and the mystery of the dying bees

Category: Microbiology

Dying bees and DNA sequencing

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October 24, 2007

Making discoveries in the open: doing digital biology with the class

Category: Bioinformatics

Would you like to have some fun playing with chromatograms and helping our class identify bacteria in the dirt?...

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October 23, 2007

California Burning!

Category: web resources

The NASA Earth observatory has some amazing photos of the wildfires in California. I've put a small version of one image here, but you should go to the NASA site...

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Computers vs. the science class: IT 1, Instructor 0

Category: teaching

It's hard to teach bioinformatics when schools work so hard to keep us from using computers....

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