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Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Geospiza Education).

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    Classic Digital Bio:

    What's that taste?

    This wasn't in the lab, but it was an accident, and it was funny later on. Normally, I wouldn't think twice about storing bacterial cultures in a refrigerator. After all, bacteria on a petri plate, inside of a plastic bag, are kind of stuck. They can't get out of the plates, and even if they did, they certainly can't crawl...

    Hunting for huntingtin, part I

    How do you go about researching a genetic disease? This multi-part series explores how digital resources can be used to learn about Huntingtin's disease. Reposted and updated from the original DigitalBio. A bit of background Alice's Restaurant is a movie with an unforgettable song that mostly revolves around Arlo Guthrie hanging out with his friends. Somewhere in the movie, the...

    Ethical issues in biotechnology: contrasting companies and classrooms

    What ethical issues concern people working in biotech?

    A day at the Biotech Expo

    No one in a life science-related industry or research lab, in Western Washington, is safe at this time of year. Surely, you're joking! No, seriously, there are teachers and science enthusiasts everywhere looking to sign you up! And don't call me "Shirley." Sign me up? That's right, it's time to prepare for the...

    Head, Shoulders, Knees, and Toes

    Why is an eye, an eye and a nose, a nose? Why do different cells create different kinds of tissues when all the cells in a single organism start out with the same set of instructions (aka DNA)?...

    Plants that make crystals that look like plants

    It's a crystalline botanical fashion show.

    White people are mutants

    Razib inspired me to share some of the story behind why white people are considered derivatives. Reposted from the Classic Digital Bio. No red herrings, here! Lamason et. al. found a single gene that controls human skin color while studying pigmentation in zebra fish (1)....

    Every Structure has a Story

    Molecular structures are wonderful for science and enjoyable, in their own respect, as works of art. Here are some of my favorite DNA structures.

    "I hear the cottonwoods whispering above.."

    Remember that scene in "The Wizard of Oz" when the trees get ticked off and start hurling apples at poor Dorothy? How do you think real plants defend themselves?

    I want my plant TV!

    A long time ago, I saw a Star Trek episode where the crew encountered aliens who lived at a different frequency. I may have this backwards, but I think the aliens moved so quickly that no one knew they were there. And until problems struck, our heroes were happily oblivious to the existence of the others. The Plants In Motion...

    BLASTing through the kingdom of life

    No biology course is complete these days without learning how to do a BLAST search. Herein, I describe an assignment and an animated tutorial that teachers can readily adopt and use, and give teachers a hint for obtaining the password-protected answer key. Development of the tutorial and the activity were supported by funding from the National Science Foundation. This is...

    What's that stuff?

    Have you ever wondered about Cheeze Whiz? why new cars have a distinctive smell? or what makes golf balls so springy?...

    Birth of a Hummingbird

    The fall soccer season is well underway and the Hummingbirds soccer team is kicking everything in sight. The hummingbirds in these two series of photos are much quicker, considerably smaller and certainly cute. A friend sent me this link since I manage the Hummingbirds soccer team. Hopefully, the person who posted these shots of baby hummingbirds will leave them up...

    Butterfiles, birds, and worms

    One of most wonderful things about the Internet has been the emergence of research projects that involve the general public. Universities like Cornell, Kansas University, and the University of Minnesota, to name a few, have established web sites and on-line databases that encourage both students and amateur biologists to participate in biological field studies. Not only do these projects extend...

    Anti-freeze for winter weather

    It seems kind of funny to be thinking of anti-freeze at the moment, with heat waves blanketing the U.S., but all this hot weather makes me miss winter. And so I decided it was time to re-post this from the original DigitalBio. Winter is coming soon, my bike ride to work was pretty chilly, and it seems like a good...

    Trade publications in biology teaching

    Trade publications; such as catalogs, technical bulletins, and web sites; are a valuable source of information for students in biotechnology-related courses. Not only do catalogs and technical publications provide current information, but they also contain a wealth of useful facts and physical constants that biologists need on-the-job. Further, using catalogs in the classroom mimics the way that science is carried...

    Sequencing the campus at the Johns Hopkins University

    A few years ago, the General Biology students at the Johns Hopkins University began to interrogate the unseen world. During this semester-long project, they study the ecosystems of the Homewood campus, and engage in novel research by exploring the microbial ecosystems in different sections of the campus. Biology lab students gather environmental samples from different campus ecosystems, isolate DNA, amplify...

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