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Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

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Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Geospiza Education).

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  • The Tangled Bank
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    Science culture:

    The Personal Genome discussion

    Bill Gates, Eric Lander, Maynard Olson, Leena Peltonen, and George Church fielded questions last night at a fascinating panel discussion on personal genomics at the University of Washington. We were fortunate to be in the audience. I'll share some of the questions and answers, in some cases shortened and paraphrased....

    Wonderful pictures of Gas Works park

    Things move off of our entry page pretty quick sometimes. If you missed this post from Bioephemera, go take a look. She has great pictures and a fascinating story about one Seattle's favorite places....

    Obsolete lab skills are what we teach best

    When will science lab courses start teaching more of what we do now, and less of what we did twenty years ago?

    What do you do when you hear "achoo!"? The etiquette of a sneeze

    In the cubical world, is the "Gesundheit" the right thing to say?

    The best thing about going to a conference is...

    is coming home and flying into Seattle. I took these pictures with my phone (in Airplane Mode, of course). In the first shot, you get to see Mt. St. Helen's and all the interesting geology around it. Can you tell which way the volcano blew? Mt. Rainier is in the background...

    The choir sings about PCR

    Yesterday, I posted a memorial for Ron Mardigian, an enthusiastic champion of science education at Bio-Rad. Today, I scanned RPM's blog and what do I see? A choir! Bio-Rad has produced a really funny music video. It reminds me of the music video from "We are the World," except some members of the choir are holding PCR machines and singing...

    By request, the glowing cheeseburger LOL cat

    Well, some of you asked for this...

    Holiday shopping with the geeks

    SciBling recommendations and holiday gifts

    Cultural confusion: white papers vs. peer review

    What's the difference?

    How to attend a poster session in Second Life

    Bora and I are giving posters in Second Life. Here's how you can attend.

    Godzilla, tuberculosis, and XDR-TB

    What's the connection?(image from Newton TAB blog) I have to admit, I don't know. But, I do know where you can find out. Dr. Gerard Cangelosi, from the Seattle Biomedical Research Institute, will be speaking about tuberculosis, godzilla, and XDR-TB, Monday night, 7 pm at the Pub at Ravenna Third Place as part of Science on Tap. tags: tuberculosis, informal...

    On the consequences of spending too much thinking about pubs and not enough time inside of them

    Drug Monkey has an interesting take on an article that I wrote the other day about publishing in biology....

    Bug hunting is a BLAST

    Software testing and the scientific method.

    Open Access vs. genetic privacy

    Is the case for open access truly "open and shut"? Will open access impede science by limiting genetic studies with families? tags: genetics, genetic privacy, bioethics, open access...

    Jumping to Conclusions about the NSTA

    One of my favorite books, "The Phantom Tollbooth," by Norton Juster, has a wonderful description of the penalties for making decisions without carefully evaluating the facts. Whenever the characters in the book arrive at a decision too quickly, they end up, literally, "jumping to Conclusions," an island far off the shore. The penalty for quick blog posts isn't so high....

    Molecular biology in the age of kits

    Do more kits mean more science or more science that's bad?

    Ethical issues in biotechnology: contrasting companies and classrooms

    What ethical issues concern people working in biotech?

    Will the real jellyfish please stand up?

    Is seeing believing or seeing deceiving?

    What's it really like on the "dark side?"

    To some inhabitants of the ivory tower, industry looks like paradise.

    Which women should win?

    Which women do you think should win the Nobel Prize?

    Sexism in science and finding our way across the fault lines

    Some of my fellow ScienceBloggers have been hotly debating the role of male science faculty in perpetuating a climate that's chilly and hostile to women. From one end of the ring, we've heard the classic complaint "It's not my fault, I didn't do it." From the other end, we hear: "It is your fault because you're not doing anything to...

    If we ignore the atmosphere, can we make it go away?

    Some of us walk by the bus stop and nervously glance at the scruffy-looking man carrying the ragged sign. I try not to breathe through my nose while I read the sign, carefully pretending all the while that I'm not really interested. Ah, it says "Repent! The world will end tomorrow!" I smile since I always love a testable hypothesis....

    Informed Consent and "An Inconvenient Truth"

    I recently completed a long trip out-of-town, giving a presentation at a Bio-Link conference in Berkeley, and teaching a couple of bioinformatics classes at the University of Texas, through the National Science Foundation's Chautauqua program. The Human Subjects Protection Course Before I left town, I had to take a class on how to treat human subjects. It seems strange, in...

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