Seed Media Group

Discovering Biology in a Digital World

My thoughts on biology, teaching, life, and exploring the living world via the digital one. Only my opinions are represented by these postings, they do not represent the viewpoints of any funding agency or Geospiza, Inc.

Profile

Sandra Porter I am a microbiologist and molecular biologist turned tenured biotech faculty turned bioinformatics scientist turned entrepreneur. My passion is developing instructional materials for 21st century biology (Geospiza Education).

Search this blog

Learn about DNA with molecular models

Exploring DNA Structure


Subscribe to Geospiza Education News


e-mail digitalbio at gmail.com


DigitalBio Favorites

Molecular Momentos


Recent Posts

Recent Comments

Archives

Categories

Rotating Blogroll

Science Education Groups

Science Blogs School Fundraiser



Keep up to date

Awards

Red Orbit

Digital Bio at Blogged


Add Digital Bio to your Technorati Favorites!

Interesting places

  • xkcd
  • The Tangled Bank
    MicrobeWorld Radio

    biotechnology:

    Workforce shortages in biotechnology, part I. Why is this a problem?

    Workforce shortages are a growing problem in the biotech industry. Communities are concerned that a lack of trained workers will either keep companies away or cause companies to move. If companies do have to move, it's likely those jobs might be lost forever, never to return. According to Robert Reich, former U.S. secretary of labor, now a professor at UC-Berkeley,...

    Starting a new biotech program? Teaching a biotech course?

    Bio-Link is accepting applications for this year's National Summer Fellows forum, June 2-6th, in Berkeley, CA. You can get an application at www.bio-link.org I'll be there, doing some kind of bioinformatics workshop. I'll probably be talking about either metagenomics or comparing protein structures and drug resistance, but if you have topic requests, feel free to submit them in the comments....

    Science educators mourn Ron Mardigian

    We often see memorials written about famous scientists, but we rarely see them about the people who work in the background to help people learn the science in the first place. Ron was one of those people whose work inspired teachers and helped spark excitement in science students throughout the world. I just learned last week that Ron passed away...

    Public high-school students from San Francisco place take honors in the International Genetically Engineered Machine Competition

    Congratulations to George Cachianes (who I've written about before), his amazing students from Abraham Lincoln High School, and collaborators at UCSF! These students, from a public high school no less, placed in the top 6 finalists, along with only one other US team. The other top teams were: Peking University (China), University of Science and Technology (China), University of Paris...

    Metagenomics, biomes, and dirt: separating good data from bad

    Sequencing the dirt: see how it's done

    Playing in the dirt: metagenomics on the JHU campus

    We have lots of DNA samples from bacteria that were isolated from dirt. Now it's time to our own metagenomics project and figure out what they are. Our class project is on a much smaller scale than the honeybee metagenomics project that I wrote about yesterday, but we're using many of the same principles....

    Computers vs. the science class: IT 1, Instructor 0

    It's hard to teach bioinformatics when schools work so hard to keep us from using computers....

    Fall bioinformatics class: welcome students!

    Welcome Bio256 students! This quarter, we're going to do some very cool things. We are going to use bioinformatics resources and tools to investigate some biological questions. My goal, is for you to remember that these resources exist and hopefully, be able to use them when you're out working in the biotech world. I don't believe that bioinformatics is a...

    What happens to graduates of high school biotech programs?

    Some of them work for Bayer.

    Do biologists need to learn programming?

    I get asked this question often enough and now that's it's come up again, it seems that I might as well answer it once and for all and get it over with....

    Careers in biotechnology, part I.

    What do people in biotechnology do on the job? What can students do with a science degree once they've finished college? Some answers can be found at the "Life Sciences Central web site. Created by the Workforce Development Council of Seattle-King County, this is a wonderful resource for anyone who's considering biotechnology for a potential career. My favorite part of...

    Biotechnology Education in Viriginia

    Do you want to learn how to use some cool biotechnology and bioinformatics methods in your college or high school class? If you're on the East coast, the best place to go is the Fralin Biotechnology Conference at Virignia Tech, July 18-21st. (Yes, it's the same Virgina Tech, and that's why I waited to post this announcement). There's something for...

    2007 Bio-Link Summer Fellows Workshop

    It must be spring. Summer course announcements are popping up everywhere and this site is no exception. Last Friday, I posted an announcement about our summer bioinformatics course in Alaska, June 27-29th. This week, I have a couple more conferences to announce. Naturally, I'll be at both of them, leading hands-on workshops for college and high school teachers in using...

    Basics: How do you sequence a genome?

    Ask Dr. Science: yes, I do take requests.

    Bioinformatics for biotech students: my favorite computer programs

    The bioinformatics classes that I teach use web services and web sites as much as possible, but I still find that it's helpful to have programs on our classroom computers. Here is a list of my favorite desktop programs for those of you who might want to add some bioinformatics activities to your biology courses....

    Mysterious lab protocols: Film at 11

    You've probably heard about enterprising researchers attaching cameras to dolphins, dogs, and other animals, in order to learn how things look from the critter-point of view. Now, some enterprising lab rats have added a new twist to this technique....

    Things that go wrong in the lab

    Like sex education in a religious household, lab technique must sometimes be learned from your friends.

    Ethical issues in biotechnology: contrasting companies and classrooms

    What ethical issues concern people working in biotech?

    Will the real jellyfish please stand up?

    Is seeing believing or seeing deceiving?

    A day at the Biotech Expo

    No one in a life science-related industry or research lab, in Western Washington, is safe at this time of year. Surely, you're joking! No, seriously, there are teachers and science enthusiasts everywhere looking to sign you up! And don't call me "Shirley." Sign me up? That's right, it's time to prepare for the...

    Confessions of an organic gardener, part I.

    The Ask a Science Blogger question of the week asks if organic foods are really worth the hype. I'm afraid my answer can't fit into one blog post. Let me start by telling you about my garden. This year my garden has been a home to local wildlife, but during the years that I do garden, I have a semi-organic...

    Trade publications in biology teaching

    Trade publications; such as catalogs, technical bulletins, and web sites; are a valuable source of information for students in biotechnology-related courses. Not only do catalogs and technical publications provide current information, but they also contain a wealth of useful facts and physical constants that biologists need on-the-job. Further, using catalogs in the classroom mimics the way that science is carried...

    Inquiring as to the sequence

    One of my favorite experiments, in our biotech program at Seattle Central Community College, was when my students sequenced promoters that they had cloned from E. coli . I liked this activity because it pulled lots of pieces together and allowed the students to connect the dots between the DNA sequences that regulate gene expression, the DNA sequences that code...

    Sequencing the campus at the Johns Hopkins University

    A few years ago, the General Biology students at the Johns Hopkins University began to interrogate the unseen world. During this semester-long project, they study the ecosystems of the Homewood campus, and engage in novel research by exploring the microbial ecosystems in different sections of the campus. Biology lab students gather environmental samples from different campus ecosystems, isolate DNA, amplify...

    If you build it, will they come?

    Many regions in the United States, and the world for that matter, are seeking to entice biotech companies to relocate. As Lorraine Ruff and David Gabrilska describe in their Genetic Engineering News Article, "Metrics for Economic Development," the exhibitors at meetings like BIO work hard to: ".. entice founders and CEOs with a wide spectrum of inducements: institutional and technological...

    San Francisco's New Bridge Leads to Biotechnology

    Yet another Bio-Link blog post. The San Francisco bay area has experienced phenomenal growth in both the number of biotech companies and the need to find employees. But, no matter how many attractions entice potential employees to move to the Bay Area, they still face the problem of finding a place to live. Housing prices are, well, a bit startling...

    "Show me the money"

    Blogging from Bio-Link, part III High school teachers have different techniques for selling their students on the benefits of science and math. When some high school instructors step in front of a class, the quiet demeanor gets put away and another persona steps out - the USED-CAR SALESMAN SCIENCE EVANGELIST. Science is no longer "science," when these instructors head up...

    "It's all about Aunt Millie"

    "It's all about saving Aunt Millie" Bob Swanson Co-Founder, Genentech More blogging from Bio-Link These next two posts salute instructors who teach in community college and high school biotechnology programs. Confronted with the daily routines of doing lab work, or keeping up with latest genotyping techniques or chromatography tools, some of us might forget that there's more to biotechnology than just the science. There are others who will never forget.

    Blogging from Bio-Link

    Blogging from Bio-Link, part I I am currently in Berkeley attending the 2006 Bio-Link summer fellows' workshop. It's hard to believe that it's been eight years since the first workshop was held. We're still meeting here in the same lovely Clark Kerr Center and I'm still, as every year, awed by the amount of initiative and drive that I see...

    Search All Blogs

    Blogs in the Network

    Top Five: Most German

    Top Science Stories

    powered by SEED - seedmagazine.com