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evolgen

AT THE CONVERGENCE OF EVOLUTION AND GENETICS

About evolgen

side_view_toon_small.JPG We talk about molecular population and evolutionary GENETICS and GENOMICS. You know, the caliper measurement of a gene's evolvability in moles.

Eschewing obfuscation ever since Morgan.

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Journals at the Convergence

April 28, 2006

Phylogeny Friday - 28 April 2006

Category: Phylogenetics

Over at my old site, I lamented the apparent death of distance based tree building algorithms. Just as all of life on earth can be divided into three domains, phylogenetic methods can be split into three groups: distance based, maximum...

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In Case You Wanted to Know a Little More About Me

Category: Admin

Via Janet comes the ABC meme. To learn a bit about me, click through to below the fold....

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April 26, 2006

From the Junk Rise the ORFans

Category: Molecular Evolution

Ian Musgrave has a good summary of genes appearing from non-coding DNA (ORFans) on the Panda's Thumb. I have written about ORFans here and here (dude's gotta link to himself sometimes). Ian's post is targeted at some claims made by...

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Kids Email the Darndest Things

Category: Science Education

If you know anything about bioinformatics, you know that programmers love to come up with clever names for their applications. NCBI's BLAST (Basic Local Alignment Search Tool) programs are some of the most used tools, but behind every successful program...

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April 25, 2006

What I Think You Should Know

Category: Science Education

Via BioCurious comes this article on ten "science question[s] every high school graduate should be able to answer." Read the list -- most of the questions are bullshit. Ok, they aren't bullshit, but they are trivia. "What percentage of the...

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Publishing Original Research on Blogs - Part 2

Category: Molecular Evolution

Bora has been pushing the idea of publishing original research (hypotheses, data, etc) on science blogs. This post is part of a series exploring the evolution of a duplicated gene in the genus Drosophila. Links to the previous posts can...

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April 24, 2006

Publishing Original Research on Blogs - Part 1

Category: Molecular Evolution

Bora has been pushing the idea of publishing original research (hypotheses, data, etc) on science blogs. As a responsible researcher, I would need to obtain permission from any collaborators (including my advisor) before published anything we have been working on...

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An Alignment Tree

Category: Phylogenetics

Via nodalpoint comes this UPGMA tree of sequence alignment algorithms from this paper. The first thing that comes to mind is that there are way too many sequence alignment methods. The second, it's kinda cool to see one method used...

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Race or Whatever

Category: Population Genetics

If you read evolgen, you've probably been following the race riots that Wilkins started. It's pretty much died down now, and it was more a debate about semantics rather than an actual scientific disagreement. This is usually the case in...

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April 23, 2006

I am an endosymbiotic cyanobacterium

Category: Admin

Otherwise known as a choloroplast: The Chloroplast You scored 46 Industriousness, 54 Centrality, and 23 Causticity! You're the Chloroplast! Most of the Earth's energy comes from the chloroplast's ability to capture the energy of the sun and fix cabon dioxide...

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