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Evolving Thoughts

One man's struggle against impermanence

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Grumpy John Wilkins is an aged, eternal student, who thinks philosophy of biology is at least as interesting as politics or sport and twice as important. He has a PhD from the University of Melbourne and a position as a Postdoctoral Fellow at the University of Queensland, in Australia. After a varied career, involving factories, gardening, civil service, publishing, graphics, public relations but not, unfortunately for the CV, driving a truck, John finally completed his thesis on species concepts, which he is working into two books. One has been accepted for publication, and will come out in 2008; the other may be contracted soon. He is also interested in cultural evolution, philosophy of religion, Macintosh computers and his kids (they sort of make it a necessity, you know?).

If anyone knows of a tenurable, or even medium term, job in philosophy of biology, let me know. Have library, will travel. The contract runs out soon...

This blog is designed to host any random thoughts that happen to be passing through my forebrain at a given moment. So there will be errors...

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General Science:

Short takes

So much has been happening in the world while I was giving a talk on the adaptiveness of religion in Sydney. The Platypus thing was one item I'd have blogged on if the rest of the blogosphere hadn't beaten...

Podblack Cat

... is a blogger on the paranormal and skeptical stuff. She has some nice posts on Women and superstition (parts one and two) and Skeptical Books for Children (parts one, two, three and four). Go check them and her...

Scientific bloopers

On a newsgroup that shall remain Nameless, one of the regulars, Bill Reich, just heard on the History Channel: Smilodon is the ancestor of all the modern big cats. Oy! So this thread is for egregiously* wrong statements made...

On the supposed bottleneck 70,000 years ago

John Hawks has a very nice post for people with basic math, explaining why a recent press release announced that 70,000 years ago the human species encountered a population bottleneck of 2000 individuals, and why it's most likely wrong....

A friend gets a trilobite named after him

... Wilkins turns green with envy. There's a special sort of immortality for those who work in paleontology which clearly outweighs the total lack of jobs and remuneration: having a species named after you. My friend and accredited geologist...

The greatest threat: antimodernism

In the thread on the recent debate between Winston and Dennett, I said that I thought the greatest threat to scientific progress and rationality was antimodernism, which was not always religious. Here, I'm going to elaborate on that cryptic...

Resolved: religion is the greatest threat to scientific progress and rationality that we face today

The Nays won, narrowly, and the debate, between Daniel Dennett and Lord Robert Winston, will be available as a podcast here. A summary is here. One thing that I find interesting in these debates, which let's face it are...

Sociology and science

I have an uncanny ability to offend those who I shouldn't be offending, with bad jokes. In a recent post I put in a Tom Lehrer video where he mocks sociology. Having had philosophy mocked by my friends and...

Lehrer on sociology

I am not being discipline-centric, no, not at all. This one's for Eli Gerson......

On ID and the public awareness of evolution

Imagine a scientific theory that very few people know or understand. Let's call it "valency theory". Now suppose someone objects to valency theory because it undercuts their view of a particular religious doctrine, such as transubstantiation. So they gather...

Sarkar slams Stein, while Kimbo kicks arse...

Biologist and philosopher Sahotra Sarkar is combative, to say the least. When he says what he means, it can hurt physically if you are the target. I almost feel sympathy for Ben Stein... And knowing one of the principals...

Oops, a slight error never killed anyone

Or so you might think NASA is saying, after a 13 year old kid showed they'd miscalculated the odds of an asteroid hitting earth by a factor of 3....

Wilkins on Wilkins on The Galilean Library

In an amazing display of misjudgment, Paul Newall of the (otherwise) excellent site The Galilean Library has interviewed me about my views on the philosophy of biology. There are some serious folk interviewed there, so of course I feel...

Vale Wheeler, and Libet updated

Daniel Holz at Cosmic Variance has a beautifully written obit for John Wheeler. We are grateful for the time the great thinkers spend on us students. Wired has an article on the updating of the classic experiments by Benjamin...

The F-word

Idiots and the ignorant should not speak on matters they do not understand. As I am both, I want to make some vague and ultimately useless comments about Framing, yet again. This has been motivated by Chris Mooney's admirable...

The boy chimp

While we're on the topic of animals that act like humans, consider this very sad, very famous case: Nim Chimpsky. Raised to be a human boy, when the funds ran out and Nim got to the age equivalent of...

Southern Skies is ten!

So we're all such cosmopolitan nerds, blogging away... here's a guy (a friend of mine, actually) who has been doing a regular web column on Southern Hemisphere Astronomy for ten years. Give it up please for the well-bearded over-educated...

Can an elephant paint?

Watch the video under the fold, from Chang Mai in Thailand. There's a moment where you realise what the elephant is representing, and a shock that comes when you see that it is representing something. I don't know if...

Physicists undertake stamp-collecting

Ernst Rutherford, the "father" of nuclear physics, once airily declared "In science there is only physics. All the rest is stamp collecting". By this he meant that the theory of physics is the only significant thing in science. Such...

Wilkins breaks away from the pack

Okay, so it's the Wilkins Ice Shelf, but it's even more important than news about me. The 6000 square mile (15,540 km2) ice shelf named for Sir Hubert Wilkins, the famous Australian Antarctic explorer (and very possibly some kind...

Expertise and ignorance

On the one hand you have Jake Young discussing the role of expertise in public debates, concluding that maybe experts shouldn't expect that information from knowledgeable folk will automatically influence the uneducated. On the other hand, this......

Arthur C. Clarke dies

When I was about 8, I read in a newspaper that one of my favourite short stories, "The Sentinel", by Arthur C. Clarke, was to be made into a movie by some film maker I never heard of. I...

Observing the hot

The ever-interesting blog of Moselio Schachter, Small Things Considered has another post of thought-provoking microbes: hyperthermophiles. These wee beasties live at 90°C in anoxic conditions. I particularly liked the passing comment: Growth and division of these organisms was observed...

New global map of land cover

The European Space Agency is doing lots of interesting work for biology, in particular ecology. This map allows you to zoom into any place on the planet to see the land cover. [From Eureka Science News]...

Lectures. Huh. What are they good for?

As I prepare my lectures for this semester (Australian universities start the academic year in late February, early March, apart from those poor sods who have summer semesters) I am moved by Moselio Schaechter's little essay In Defense of...

The "design" mistake

Back when Darwin was a student at Cambridge, he read, and almost memorised the Rev William Paley's Natural Theology, and thereafter remained impressed by the obvious adaptiveness of the parts of organisms and their interrelations. As is well known,...

Expectorated!

A real journalist reviews a media conference held for the new pro-ID film Expelled: Freedom of expression is unseemly at an Expelled press conference. There was no give-and-take, no open marketplace of ideas, in fact, scarcely any questions at...

What is a disease?

Biology does normativity all the time. There are things that are the "normal" type of state of a species, an organism, an ecosystem, and so on, and things that are abnormal. But the puzzling thing is that all philosophers...

Pro-Test, two years later

Some of you may recall I was immensely impressed by Laurie Pycroft, a 16 year old who started Pro-Test, which defended the use of animal models against the vicious and largely unthinking nastiness of animal "rights" protesters. Now Nick...

Intermediate concepts in science: a list

As well as the Basic Concepts list, I occasionally get sent some links that are in my mind too advanced to be basics, but too good not to mention. So I will do with them what I have done...

Research blogging goes live

You'll recall that we had a new logo and link for Blogging Peer Reviewed Research. This is now rebadged and has become Research Blogging. It will aggregate and feed the posts on peer reviewed research....

Happenings

So, I just found out that I'm teaching this semester, which is a comfort (money will come in, and we can eat) and a pain (I am going to Arizona in March, so we will have to sort out...

Why not information?

OK, so by now a number of you are either quite puzzled or are up in arms about this notion of mine that genes aren't information. First I'll recap and then make some general philosophical and historical points....

Is information essential for life? No.

A recent New Scientist article poses the often-posed question in the title. The answer is mine. Forgive me as I rant and rave on a bugbear topic......

ROUS's? I don't believe they exist.

Anyone who knows the film The Princess Bride knows what happens next. Westley gets hit hard by a rodent about the size of a pitbull. However, it seems that ROUS's (Rodents of Unusual Size) actually may have existed, in...

Students publishing

TR Gregory at Scientific Blogging asks why advisors would encourage their students to publish. One of the reasons is: Most of the graduate and undergraduate students with whom I have worked directly have been quite excited by the possibility...

Is there a physicist in the house?

One of my colleagues just raised a point I hadn't thought of vis á vis Special Relativity. I had always thought that an observer on a photon would not experience time. My colleague suggests that each frame of reference...

I hate a barnacle...

...said Charles Darwin, more than any man ever has. He should have, too - he spent seven years of his life working up the first encyclopedic monograph on the group. But that pales into insignificance compared to Alan Southward,...

Nice genetics quip

Microsoft Word’s “Track Changes” and Endnote are synthetic lethals. From The Futile Cycle. "A synthetic pair of genes are two gene variants that alone are fine, but when combined into the same organism, cause it to die." Why? When...

The Golden Compass - a lead ballon?

Henry Gee reviews the Golden Compass, and comes up with largely the same conclusions I would have had I been as insightful as he. A quote: It’s a long time since I read the book, The Northern Lights, on...

Having PC heroes

One of the things about being a Mac user, for 20-odd years now, is that you just like your corporate hero. Sure, they stuffed up on a number of hardware releases, and their delay in getting a multitasking OS...

The man who changed the world

OK, so today is Christmas day, December 25. On this day* a man was born who changed the world. He affected a growing tradition that has left no part of the world untouched, for good or ill. He revealed...

Sunday sermon: on cultural isolation

Okay, so the Eighth Day Inventism calendar as rolled around to coincide our Holy day with one of yours. We Inventists are open minded people and often try to reach out to you heathen irreligious puppy grinding moral monsters....

Levitt on Fuller

As I mentioned earlier, I love a good book review if it excoriates a stupid book. Norman Levitt, of Rutgers University, has an absolutely lovely piece of critical invective for Steve Fuller's defense of Intelligent Design here. Fuller is...

Do bacteria think?

Let's suppose there is a game, say, baseball. This game is named and described for the ways that adult humans with bats, balls, and fields, behave normatively, as written up in an authoritative manual. Everybody knows what baseball is,...

When academics attack

I love a good academic stoush, so long as I'm just watching and not involved either as an antagonist or as collateral damage. Recently, Steven Pinker published a book, The Stuff of Thought: Language as a Window into Human...

148 years ago today

... a book was published that changed the way we thought of biology....

Magnetic anomaly map finished

[A guest post by palentologist and geologist Chris Nedin] It's taken the best part of 50 years but it's finally here! 50 years after the International Geophysical Year (1957-8) that took a global geophysical view of the globe, one...

Upstream Issues

Oh, I just know this is going to get enmeshed in arguments about framing, but I don't care. A new movement in the UK, home of democracy as we know it, involves scientists getting out there and active in...

Small world

Here is an article in Harvard Magazine on bacteria and other wee beasties that make up the bulk of the living world, that is worth reading. It's called "The Undiscovered Planet". Hat tip to Jason Grossman....

Icons for peer-reviewed blogging

The above are icons to be used when blogging on actual peer-reviewed research (as opposed to popular reports or kookery). I had a marginal involvement in this (I made some passing comments early on) so it is with great...

How not to Feyerabend

On Monday night last, Jason Grossman, a philosopher form the Australian National University rang me with an idea. He was coming to my university to give a talk entitled "How to Feyerabend", arguing that Feyerabend was a dadaist rather...

How to review intelligent design: defending Hacking

Jason Rosenhouse, of Evolutionblog, has posted a rather snarky review of a book review by the historian and philosopher Ian Hacking that was published in The Nation. Jason titled his comment "How not to defend evolution". Here's my take...

The constancy of change and the lack of balance

All the strangers look like family All the family looks so strange The only constant I am sure of Is this accelerating rate of change — Peter Gabriel, Downside-Up, from the Ovo Album Creek Running North has a delightful...

Speaking scientific factiness to power

When the Republicans began their deconstruction of American democracy, under Newt Gingrich, one of the immediate targets was the emasculation of the Office of Technology Assessment. Since that time, the Republicans have mangled, misused and rhetorically denied any science...

Creationist lawsuit thrown out

Larry Caldwell, a well-known proponent of antievolutionism, tried and failed to get "the controversy" taught in the school district of his kids' school. He failed, so he sued the school board because he was "discriminated against... for being Christian"....

What is "life", again?

Now we turn to the modern accounts of life. In 1828, Friedrich Wöhler produced uric acid without using “kidney of man or dog”. Prior to that time, there was considered to be something different between organic chemistry and inorganic...

Australian bees are BETTER than American bees

So, you thought that Colony Collapse Disorder, which is causing billions of dollars in losses in American agriculture, was an act of nature? You poor fools! It's a plot, I tell yez. We Australians have hardier bees than you...

Organic farming - a good idea?

COSMOS magazine has an interesting article sure to stir up trouble by suggesting that, among other things, global organic farming would necessitate clearing all remaining forests and even then a substantial portion of the earth's population would starve. I...

The meaning of "life"

Carl Zimmer has one of his usually clear and precise articles on recent work on the nature of life, focussing on the work of Carol Cleland, who is at the National Astrobiology Institute, despite reduced funding for actual science...

Theories of speciation

Continuing on from my last post, let's consider the modes of speciation that are called into account for the existence of species....

Icon for Blogging Peer Reviewed research

Dear readers, Dave Munger of Cognitive Daily has suggested that we have a universally available icon to indicate that the blogger is blogging about peer reviewed research, and he has created a discussion blog at BPR3. Please go make...

My species definitions reader is accepted for publication

I have a book forthcoming, Species definitions: a sourcebook from antiquity to today, which gives and commentates definitions of "species" in logic and biology for 2,500 years, from Plato to Templeton and beyond. It's designed as a reader for...

What is an individual?

Rob Wilson has a new entry up at the Stanford Encyclopedia of Philosophy, entitled "The Biological notion of an individual". It discusses an interesting problem, one that goes back to discussions by Julian Huxley in 1911. What is an...

[Philosophy of] science blogging

I've been pretty quiet of late. In part this is because I've been travelling with little internet access, but also it's because I'm teaching a subject I haven't studied in years, and because I was asked to write a...