Pharyngula

I've been tinkering with a lovely software tool, the 3D Virtual Embryo, which you can down download from ANISEED (Ascidian Network of In Situ Expression and Embryological Data). Yes, you: it's free, it runs under Java, and you can get the source and versions compiled for Windows, Linux, and Mac OS X. It contains a set of data on ascidian development—cell shapes, gene expression, proteins, etc., all rendered in 3 dimensions and color, and with the user able to interact with the data, spinning it around and highlighting and annotating. It's beautiful!

Unfortunately, as I was experimenting with it, it locked up on me several times, so be prepared for some rough edges. I'm putting it on my list of optional labs for developmental biology—3-D visualization of morphological and molecular data is one of those tools that are going to be part of the future of embryology, after all—but it isn't quite reliable enough for general student work. At least not in my hands, anyway. If one of my students were to work through the glitches and figure out how to avoid them, though, it could be a useful adjunct to instruction in chordate development.

If you want to play with it, I'll give you a quick overview of what's going on in the dataset. A paper by Munro et al. has used these kinds of data to summarize key events in the transformation of a spherical ball of cells into an elongate, swimming tadpole larva.

Ciona is a tunicate, a marine invertebrate chordate, that in its adult form is a kind of sessile barrel-shaped blob called a sea squirt that attaches to a substrate and spends its life filter-feeding. As an embryo, though, it rapidly forms a tadpole shaped larva that displays its chordate affinities: it has a notochord, and gill slits, and a long post-anal tail, and a dorsal nerve cord. It uses these features to swim, as a dispersal apparatus, before settling down and metamorphosing into the adult form.

The simple Ciona tadpole. Schematic overview of the major tissue types. The colour scheme used here and in Figures 2-4 is as follows: brown, mesenchyme; dark blue, nerve cord; green, palps; gray, epidermis; light blue, brain; orange, muscle; red, notochord; yellow, endoderm.

Their development is different from ours in some significant ways. They exhibit an invariant, stereotyped pattern of cleavages, with a mosaic pattern of development in which each newly divided cell is assigned to a specific and relatively inflexible fate. Each cell has a specific and predictable lineage, which has been a real boon to embryologists since Conklin described them in 1905—you can recognize each cell in the embryo, give it a name, follow what it does, experiment on it, and ask what tissues it will generate. The cells also have different distributions of pigment, so even at the turn of the last century it was relatively easy to follow their development; it was as if they came with a colored label.

The diagram below shows some of the stages. As you can see, the divisions can be asymmetric, and shape and size are also indicators of cell identity.

Cleavage stages in ascidian embryos. (a) Patterns of induction and cleavage that accompany early fate specification in ascidian embryos. For each hemisphere, the left column illustrates the progressive fate- restriction of each blastomere, and the right column illustrates corresponding patterns of induction and asymmetric cell division. In the left columns, fate-restricted blastomeres appear in the colour of the corresponding tadpole tissue of Figure 1b. Blastomeres giving rise to two or more tissue types are not coloured. In the right columns, blastomeres that are induced are coloured in pink; blue lines link sister blastomeres with equal volume; red lines link sisters with unequal volumes; black lines link sisters whose volume has not been determined. In the vegetal view of the 110-cell stage, cells marked by an asterisk have not undergone cleavage since the 64-cell stage. (b) Visualisation in green of the surface of contact between the a6.5 and A6.2 blastomeres; made using the 3D Virtual Embryo module.

One other quirk of ascidians is that there is almost no cell migration, and a cell generally hangs on to its nearest neighbors throughout embryonic development. In vertebrates, we're used to seeing cells uncouple from each other extensively and stream to new locations in the embryo. One classic example is gastrulation: in the two-layered early embryo, a subset of cells move into the interior of the animal to establish a third germ layer, the mesoderm. Ciona also gastrulates, but cells don't dissociate from each other. Instead, the embryo forms a flattened disc, and then curls in on itself to move cells into an interior space.

Phases of gastrulation in Ciona. Top panels shows coloured tracings of the same SEMs. Bottom panels shows tracings of single parasagital confocal sections taken at corresponding stages. Anterior is up in all panels, and animal is left in the bottom panels. (a,b,c) First phase: formation of cup-shaped embryo. (a) 76-cell stage: the vegetal plate first flattens. (b) 110-cell stage: apices of the vegetal cells (indicated by asterisks) constrict as the vegetal half of the embryo bends inwards to form a shallow cup; the animal-half spreads as the animal cells divide once and then flatten. (c) Mid-gastrula: the cup deepens asymmetrically as anterior and lateral mesoderm cells fold inwards, while endoderm, muscle and epidermal precursors execute a single round of cell divisions. (d) Second phase: extension of anterior tissues, and asymmetrical blastopore closure produces a completely asymmetrical embryo. Red arrows indicate AP-oriented cell divisions in the neural plate and notochord lineages that drive extension of the anterior plate. Along the anterior lip of the blastopore, apices of neural plate cells [white arrow in middle panel of (d) and notochord cells (not shown)] constrict as the blastopore closes.

Finally, a round ball of cells has to reshape itself into that elongate tadpole form you can see at the top of this page. In this process, we get into more familar ground for vertebrate embryologists: elongation of a cluster of cells is accomplished by intercalation. Cells push medially, into the interior of the tissue. When a cell moves inward, it pushes neighboring cells to either side, at right angles to the direction of movement. All of the cells jostling to squeeze in between each other, to intercalate, generates a force for elongation. Imagine a pile of coins loose on your desk. If you put your hands on the edges of the pile and push all the coins inward, they'll stack on one another and pile higher while reducing their overall footprint on the desk. The same principle operates here; cells are more obliging than rigid metal coins, though, and will eventually get into a perfect stack that maximizes the length of the column. (You'll often see the notochord described with the term "stack of coins" in the literature—it actually looks a bit like that.)

Cellular processes that accompany tail elongation during neurula and tailbud stages. (a,d,g) Early neurula; (b,e,h) early tailbud; and (c,f,i) late tailbud stages. The view is of the dorsal side, and posterior is up for all panels. Black arrows indicate whole-tissue deformations; white arrows and outlined cells indicate local cell shape change and rearrangements. (a-c) Notochord: during neurulation, (a) the monolayer notochord plate invaginates to form a cylindrical rod, while mediolateral intercalation within the plate drives AP extension. During tailbud stages, (b) intercalation about the circumference of the rod drives AP elongation of the notochord. (d-f) Muscle: during neurulation, (d) cell rearrangements transform a roughly 6 x 6 array of cells into an array 3 cells high and 12 cells long. During tailbud stages, (e) the initially isodiametric cells elongate individually along the AP axis as the tail further extends. (g-i) Neural plate and tube: during neurulation, (g) invagination turns the neural plate into a tube, beginning at the posterior and progressing anterior. During tailbud stages, (h) mediolateral intercalation (at the top and bottom of the tube), and oblique divisions (not shown), followed by mediolateral shearing (along the sides of the tube), accompany elongation of the tube.

That should get you started in figuring out what's going on. Now go play with the free software and watch all these events happen! The paper by Tassy et al. listed below also describes how the software is used to examine cell shape changes and interactions in ascidian development.

Munro E, Robin F, Lemaire P. (2006) Cellular morphogenesis in ascidians: how to shape a simple tadpole. Curr Opin Genet Dev. 16(4):399-405.

Tassy O, Daian F, Hudson C, Bertrand V, Lemaire P (2006) A quantitative approach to the study of cell shapes and interactions during early chordateembryogenesis. Curr Biol 16:345-358.