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Retrospectacle: A Neuroscience Blog

The trials, tribulations, and joys of a Neuroscience gradute student writing her thesis in the postmodern, post-Y2K world.

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me%20and%20pep.jpg Shelley Batts is a Neuroscience PhD candidate at the University of Michigan. She studies hair cell regeneration in the cochlea, and is just embarking on that quixotic quest called 'thesis.' She lies awake at night pondering how science intersects with politics, culture, policy, money, medicine, and religion in an attempt to be more than just a niche scientist sitting in the oh-so-lovely ivory tower. Follow me and my parrot on the quest to get funded, get a PhD, and stay sane.
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Fibonacci Numbers, the Cochlea, and Poetry

Category: Inner Ear BiologyTruth and Beauty
Posted on: October 12, 2007 8:44 AM, by Shelley Batts

The Fibonacci numbers form a sequence defined by this relation (don't be scared!):

fib.bmp

What this means, in English, is that it is a sequence of numbers whose relationship is this: after the first two numbers, each proceeding number is the sum of the previous two numbers. For example 0, 1, 1, 2, 3, 5, 8, 13, 21, 34, 55, 89, 144, 233.....and so on. Quite simple, really.

Fibonacci numbers have an interesting property. When you divide one number in the sequence by the number preceding it, you are left with a number very close to 1.618. This number is called the "golden ratio," and rectangle whose sides is equal to the golden ratio is known as a "golden rectangle."

Fibonacci numbers are not purely artifact, they are also found in nature in an uncurling fern, the branching of trees, and leaflets of the pineapple. The Fibonacci sequence also describes the "golden spiral," which is when a "golden rectangle" is subdivided in smaller and smaller golden rectangles (example below)--the result being a predictable spiral.

golden59.gif

One example of a biological structure in the mammalian body which is very close to a "golden spiral" is the cochlea. It is not a perfect golden spiral, and there is individual variation between and within species.

cochlea1.jpg

Another close example is the shell of a mollusk, or a nautilus shell (below).

nautilus%20shell.jpg

The Fibonacci sequence has been used to structure poetry, ie the syllables per line follow the Fibonacci sequence. As a former student of poetry, I couldn't help but try my hand.

These poems are based on the Fibonacci sequence and have been published in the Science Creative Quarterly, when I wrote them about 6 months ago.

---

Shyness

Fish
dive
deeply,
mouths agape,
fins proud and ragged,
filtering the oceans apart
until shimmer-hooked and then flopping in boat bottoms,
when gills heave, gasp, drowning in air; eyes glaze like dropped
marbles, clouded and cracked, but holding.

---

Ego

She
will
nod as
you pass her
and you both will know
you are young and raw, half-bitten,
spitten in disgust like fruit picked before its season.

-----

Heaven

Dead
leaves
jump back
on the trees,
a reverse whirlwind
and an impossible sunset
seeking their origins, the life from whence they came.

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Comments

1

Um, "you are left with a number very close to 1.618, and this number is fixed after the 13th number in the series." I'm not sure what you're trying to say --- the Golden Ratio, phi, is the limit of F(n)/F(n-1) and n goes to infinity, and it's transcendental, so you get new digits every time you pick a bigger n. There's nothing obviously magical about F(13)/F(12).

I've been thinking about phi quite a bit recently ... I'm convinced its not an accident that it shows up so often in biological stuff, but deeply necessary. I haven't figured out how to make this into a clear argument rather than an intuition, though.

Posted by: Charlie (Colorado) | October 12, 2007 10:12 AM

2

Charlie, have you seen the movie 'Pi' by Aronofsky? If not, you should, as it is a very interesting treatment of what you just mentioned. Fictional of course, but cool.

The golden ratio (and the 'magic' is just a name and of course not supposed to be magical) to which i was referring is not pi (3.14...). Its described here: http://en.wikipedia.org/wiki/Golden_ratio

Posted by: Shelley Batts | October 12, 2007 11:14 AM

3

Wonderful connection between the numerical, and the organic. I have never seen a poem using these fundementaly natural princables. Gaston Julia (designer of the "Julia set") would have had a lot to say about your mesh of the two as he was both a mathematician and a poet.

Posted by: Nate | October 12, 2007 11:49 AM

4

I have a kind of pavlovian twitch whenever someone mentions the Fibonacci series. In my defence I can lay claim to having studied computer science at university, and there everytime since, whenever I learnt a new programming language guess what one of the first things I had to write a program to calculate!

I am glad to say I no longer bother much with that programming stuff, these days being a database person.

Posted by: Matt Penfold | October 12, 2007 11:55 AM

5

Hi Shelly,

I still speculate about why there is such a close connection or even intimate relation of the cochlea to the semicircular canals?

Some of the African cats seem to capture birds capable of flight better by sound than sight.

Posted by: Doug | October 12, 2007 1:11 PM

6

Hi, Shelly,

Dropping by from Kim Klein's blog, where I saw your lovely comment. You must be a very kind, classy (as well as brilliant) young woman.

Best wishes to you, and good luck in the scholarship contest.

Posted by: candygirlflies | October 12, 2007 1:28 PM

7

my two favorite examples of fibonacci in nature is patterning of seeds on the face of sunflowers and human form as visualized by the da vinci picture 'vitruvian man' - which i think is phi-related. if i'm not mistaken there's a lot of fibonacci/golden-ratio plant patterning (like placement of leaves on flower stalks and veins on leaves).

and just to clarify, phi and pi are different, phi being the greek letter used to denote the golden ratio, and pi for the relationship between radius and circumference of a circle (charlie was in fact talking about the same thing as you, you just might have missed the 'h', an easy mistake). Charlie's also right about the value of phi as 'n' reaches its limit at infinity. the value for phi does change after n=13, just by such a small amount is isn't going to be noticeable using regular scientific calculators (which crop after a certain number of digits post decimal point).

Posted by: darkman | October 12, 2007 1:30 PM

8

nice poetry by the way. i find this post funny only because maybe two posts below this one (lions skull) you claim having no artistic skills whatsoever... writing ain't drawing, but it is still art.

Posted by: darkman | October 12, 2007 1:33 PM

9

Got it darkman! Sorry for misunderstanding you Charlie. You know how us blondes can be. ;)

Posted by: Shelley Batts | October 12, 2007 1:34 PM

10

Spontaneous formation of Fibonacci spiral in elastically mismatched bilayer.
http://www.physorg.com/news97227410.html

Posted by: Colugo | October 12, 2007 2:05 PM

11

The Peruvian calendar is also based on Fibonacci numbers and the last possible date on their calendar is 12/31/2012....interesting!

Posted by: Melvin Cade | October 12, 2007 3:50 PM

12

Beautiful! Very nice Shelley, thanks for sharing those poems. I totally agree with Darkman. There's more artistic talent there than many of the pieces I saw during Nuit Blanche.

Posted by: The Flying Trilobite | October 12, 2007 11:01 PM

13

Great post. I discovered the Fibonacci sequence through xkcd:

http://xkcd.com/289/

Posted by: Hai~Ren | October 13, 2007 6:54 AM

14

hi shelly, i discovered your blog in the finalists blogging scholarship 2007. i'm running a german blog on linguistics and poetics and had to carry the great idea of fibonacci-poem from here around the globe. thanks and much luck for the competition from germany.

Posted by: LeV | October 13, 2007 7:55 AM

15

Hi Shelley,

Got sent here after hearing you are up for a scholarship. I'm going to nitpick because I'm a mathematician, but the ratio of consecutive Fibonacci numbers is not exactly constant, not even after the 13th. It may be identical up to however many digits you are looking at, but it isn't really constant.

The golden ratio is a very interesting number, appearing, as you point out, all over the place in nature.

Posted by: RickD | October 13, 2007 10:05 AM

16

Does anyone else notice the similarity between the design of the cochlea and the Flying Spaghetti Monster?
http://www.venganza.org/

Posted by: Marilyn Terell | October 13, 2007 12:08 PM

18

Thanks for posting your poems, and the explanation of Fibonacci numbers. There is a good rythm to the poems.

Posted by: trane | October 13, 2007 6:06 PM

19

Sweetness, I'm a mathematician, remember?

I'll spank you next time you come through Denver.

Posted by: Charlie (Colorado) | October 14, 2007 9:39 PM

20

Shelley,
What a great post. I began to notice something oddly regular about the arrangement of scales on a pine cone when I began doing a bunch of drawings of them years and years ago, and lo, their swirls are based on the Fibonacci series. Most have 5 spirals going one way, 8 going the other, or 8 and 13, like the Monterey pine cone I picked up in Big Sur.
And I agree with whoever said that your poems are as artful as any drawing.

Posted by: John P. Baumlin | October 14, 2007 10:22 PM

21

Sometimes getting funding means spiraling out of the realm of sanity. Yuk Yuk

Posted by: Josh | October 16, 2007 6:25 AM

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