metabolism https://scienceblogs.com/ en Benefits to being furry, but not fat, in a cold environment https://scienceblogs.com/lifelines/2017/08/25/benefits-to-being-furry-but-not-fat-in-a-cold-environment <span>Benefits to being furry, but not fat, in a cold environment</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p><a class="irc_mil i3597 iN7YM9I5m4RQ-zixyDjKkw5M" tabindex="0" href="https://www.google.com/url?sa=i&amp;rct=j&amp;q=&amp;esrc=s&amp;source=images&amp;cd=&amp;cad=rja&amp;uact=8&amp;ved=0ahUKEwjwpuqoyvHVAhVRwmMKHdycB-sQjRwIBw&amp;url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FOb%2Fob_mouse&amp;psig=AFQjCNHr7TjUBIIBK4ez6QUb3SJJ4vrDkg&amp;ust=1503722859374686" target="_blank" rel="noopener noreferrer" data-ved="0ahUKEwjwpuqoyvHVAhVRwmMKHdycB-sQjRwIBw" data-noload="" data-cthref="/url?sa=i&amp;rct=j&amp;q=&amp;esrc=s&amp;source=images&amp;cd=&amp;cad=rja&amp;uact=8&amp;ved=0ahUKEwjwpuqoyvHVAhVRwmMKHdycB-sQjRwIBw&amp;url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FOb%2Fob_mouse&amp;psig=AFQjCNHr7TjUBIIBK4ez6QUb3SJJ4vrDkg&amp;ust=1503722859374686" data-ctbtn="2"><img class="irc_mi" src="https://upload.wikimedia.org/wikipedia/commons/0/0b/Fatmouse.jpg" alt="Image result for obese mouse" width="390" height="265" /></a></p> <div id="main" data-jiis="cc"> <div id="cnt" class="big"> <div id="rcnt"> <div class="col"> <div id="center_col"> <div id="res" class="med"> <div id="search" data-jiis="uc" data-jibp="h"> <div data-ved="0ahUKEwiXpYaoyvHVAhWiwlQKHXQqA70QGgh1"> <div id="ires" data-async-context="query:obese%20mouse"> <div id="rso"> <div id="isr_mc"> <div id="irc_bg" class="irc_bg irc_land"> <div id="_YTc"> <div id="irc_cc"> <div class="irc_c i8187 immersive-container" data-ved="0ahUKEwjwpuqoyvHVAhVRwmMKHdycB-sQ-z8IEg" data-item-id="1hPBdlUyw_-AqM:" data-hveid="18"> <div class="irc_t i30052" data-ved="0ahUKEwjwpuqoyvHVAhVRwmMKHdycB-sQ5OoBCBM" data-hveid="19" data-noload=""> <div class="irc_mic r-iN7YM9I5m4RQ"> <div class="irc_mimg irc_hic iN7YM9I5m4RQ-lvVgf-rIiHk">Image of a genetically obese mouse (left) from <a href="https://en.wikipedia.org/wiki/Ob/ob_mouse">Wikipedia</a>.</div> <div class="irc_mimg irc_hic iN7YM9I5m4RQ-lvVgf-rIiHk"></div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> <p>To deal with cold environments, mammals have several options. They could produce heat by increasing metabolism or shivering or they could conserve heat by constricting blood vessels in their skin or snuggling with a friend or insulating materials. With this in mind, researchers wondered how varying levels of insulation (obesity, fur) in mice affected heat loss and how much energy the animals used to maintain body heat. Their thinking was that more insulation would prevent heat loss and lower energy needs. Sounds logical, right?</p> <p>This reasoning was indeed logical for the amount of fur an animal had. Mice with shaved fur did have increased metabolism compared to those with normal body hair. What was surprising to the researchers was that obesity was not at all related to preventing heat loss in the mice. In fact, obese mice lost just as much heat as non-obese mice.</p> <p><strong>Source:</strong></p> <p>Fischer AW, Csikasz RI, von Essen G, Cannon B, Nedergaard J. No insulating effect of obesity. <em><span class="highwire-cite-metadata-journal-title highwire-cite-metadata">American Journal of Physiology - Endocrinology and Metabolism. </span></em><span class="highwire-cite-metadata-date highwire-cite-metadata">Published 5 July 2016 </span><span class="highwire-cite-metadata-volume highwire-cite-metadata"><span class="label">Vol.</span> 311 </span><span class="highwire-cite-metadata-issue highwire-cite-metadata"><span class="label">no. </span> 1, </span><span class="highwire-cite-metadata-pages highwire-cite-metadata"> E202-E213 </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="label">DOI:</span> 10.1152/ajpendo.00093.2016</span></p> </div> <span><a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a></span> <span>Thu, 08/24/2017 - 19:01</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/life-science-0" hreflang="en">Life Science</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/mouse" hreflang="en">mouse</a></div> <div class="field--item"><a href="/tag/obese" hreflang="en">obese</a></div> <div class="field--item"><a href="/tag/temperature" hreflang="en">temperature</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/lifelines/2017/08/25/benefits-to-being-furry-but-not-fat-in-a-cold-environment%23comment-form">Log in</a> to post comments</li></ul> Thu, 24 Aug 2017 23:01:30 +0000 dr. dolittle 150514 at https://scienceblogs.com New site, new stories https://scienceblogs.com/weizmann/2016/01/03/new-site-new-stories <span>New site, new stories</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p>Cells that “spit” out their contents and messenger RNA that is not so swift at delivering its message. Those are two brand new stories on our <a href="http://wis-wander.weizmann.ac.il/">new and improved website</a>. Check it out and let us know what you think.</p> <p><a href="http://wis-wander.weizmann.ac.il/content/how-cells-spit-it-out" target="_blank">The first story</a> arose from a simple question: How do secretory cells – those that produce copious amounts of such substances as tears, saliva or all those bodily fluids – manage to get their contents out of the cell? Cells are walled all the way around; they don’t really have doors for letting things the size of a drop of fluid out. Instead, they use the vesicle system – small globes made of the same stuff as the cell membrane that transport the drops out to the edge. The vesicles then fuse with the membrane, releasing their cargo to the outside.</p> <p>Prof. Ben-Zion Shilo and his group realized that this was all well and fine for small amounts of biochemicals, but secretory cells would need a better system. Their results, which involved a lot of intricate time-lapse observation in the saliva glands of fruit-fly larvae, are beautiful to watch as well as instructive.</p> <div style="width: 310px;display:block;margin:0 auto;"><a href="/files/weizmann/files/2015/12/Cover-suggestion.jpg"><img class="size-medium wp-image-929" src="http://scienceblogs.com/weizmann/files/2015/12/Cover-suggestion-300x212.jpg" alt="Salivary gland of a larval fruit fly. Vesicles (red) carrying the glue must empty their contents quickly and efficiently" width="300" height="212" /></a> Salivary gland of a larval fruit fly. Vesicles (red) carrying the glue must empty their contents quickly and efficiently </div> <p><a href="http://wis-wander.weizmann.ac.il/content/homebody-rna" target="_blank">The second story</a> arose from a surprising observation: Certain liver cells that are involved in metabolism seemed to have large amounts of messenger RNA in their nuclei.  Why would RNA stick around in the cell nucleus, instead of rushing out to make proteins? Dr. Shalev Itzkovitz and his group followed up on this question by asking further questions: How many cells keep RNA in their nuclei? How long does this RNA tend to stay? Which genes produce the homebody RNA?</p> <p>Although they have not yet answered every one of their questions, they have uncovered a new level of regulation in the cell – one that is not immediately intuitive.</p> <div style="width: 310px;display:block;margin:0 auto;"><a href="/files/weizmann/files/2015/12/Nuclear-retention2.jpg"><img class="size-medium wp-image-930" src="http://scienceblogs.com/weizmann/files/2015/12/Nuclear-retention2-300x176.jpg" alt="Nuclei of liver cells, mRNA of certain genes in white" width="300" height="176" /></a> Nuclei of liver cells, mRNA of certain genes in white </div> <p>Revealing how some cells get rid of their contents or discovering that others hoard things deep within – neither finding will cure disease tomorrow. Both are changing our understanding of how the human cell functions, and both are going to contribute, in the future, to human health and welfare. We promise to keep bringing you these stories and more.</p> </div> <span><a title="View user profile." href="/author/jhalper" lang="" about="/author/jhalper" typeof="schema:Person" property="schema:name" datatype="">jhalper</a></span> <span>Sun, 01/03/2016 - 00:05</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/basic-research" hreflang="en">basic research</a></div> <div class="field--item"><a href="/tag/biochemistry" hreflang="en">biochemistry</a></div> <div class="field--item"><a href="/tag/biological-regulation" hreflang="en">biological regulation</a></div> <div class="field--item"><a href="/tag/biophysics" hreflang="en">Biophysics</a></div> <div class="field--item"><a href="/tag/dna" hreflang="en">DNA</a></div> <div class="field--item"><a href="/tag/genes" hreflang="en">genes</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/rna" hreflang="en">RNA</a></div> <div class="field--item"><a href="/tag/benny-shilo" hreflang="en">Benny Shilo</a></div> <div class="field--item"><a href="/tag/cell-membrane" hreflang="en">cell membrane</a></div> <div class="field--item"><a href="/tag/cell-nuclei" hreflang="en">cell nuclei</a></div> <div class="field--item"><a href="/tag/messenger-rna" hreflang="en">messenger RNA</a></div> <div class="field--item"><a href="/tag/secretion" hreflang="en">secretion</a></div> <div class="field--item"><a href="/tag/shalev-itzkovitz" hreflang="en">Shalev Itzkovitz</a></div> <div class="field--item"><a href="/tag/basic-research" hreflang="en">basic research</a></div> <div class="field--item"><a href="/tag/biochemistry" hreflang="en">biochemistry</a></div> <div class="field--item"><a href="/tag/biological-regulation" hreflang="en">biological regulation</a></div> <div class="field--item"><a href="/tag/biophysics" hreflang="en">Biophysics</a></div> <div class="field--item"><a href="/tag/genes" hreflang="en">genes</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/weizmann/2016/01/03/new-site-new-stories%23comment-form">Log in</a> to post comments</li></ul> Sun, 03 Jan 2016 05:05:53 +0000 jhalper 71296 at https://scienceblogs.com Polar bear survival during summer https://scienceblogs.com/lifelines/2015/07/21/polar-bear-survival-during-summer <span>Polar bear survival during summer</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p><img class="attachment-800x430 wp-post-image" src="http://www.rawstory.com/wp-content/uploads/2015/07/polar--800x430.jpg" alt="IB Times - Polar bears cannot compensate for sea ice loss starvation with slowed metabolism" width="437" height="235" /></p> <p>If you happen to be in the Arctic this summer polar bears (<em>Ursus maritimus</em>) can be spotted spending their time on the sea ice or on the shore in areas where ice has melted. While it is difficult to study the physiology of bears living on the ice, it had been hypothesized that bears living on shore experience a state similar to winter hibernation in which they attempt to decrease their energy expenditure when food resources are low. However, new research published in <em>Science</em> shows that bears living on the ice as well as those on shore experience some decrease in activity as well as body temperature while their energy expenditure is actually similar to that of animals that are fasting but not hibernating.</p> <p>The research team enlisted help from the US Geological Survey, US Fish and Wildlife Service, two helicopters and an ice-breaking vessel to help capture and tag over two dozen polar bears as well as implant 17 bears with a probe that can measure body temperature. It took 36 days just to recapture the animals with the temperature probes!</p> <p>With the Arctic ice beginning to melt earlier in the summer and also taking longer to freeze in the winter, these prolonged periods of ice melt may be a challenge to the animal's survival over time according to study co-author Merav Ben-David (University of Wyoming - Laramie).</p> <p><strong>Sources:</strong></p> <p>Whiteman JP, Harlow HJ, Durner GM, Anderson-Sprecher R, Albeke SE, Regehr EV, Amstrup SC, Ben-David M. Summer declines in activity and body temperature offer polar bears limited energy savings. <em>Science, </em><em><span class="slug-vol">349(</span><span class="slug-issue">6245), </span><span class="slug-pages">295-298, July 2015.  </span><br /> DOI: <span class="slug-doi" title="10.1126/science.aaa8623">10.1126/science.aaa8623 </span></em></p> <p>Image of a "shore" polar bear from National Geographic.</p> </div> <span><a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a></span> <span>Mon, 07/20/2015 - 20:41</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/life-science-0" hreflang="en">Life Science</a></div> <div class="field--item"><a href="/tag/endangered" hreflang="en">endangered</a></div> <div class="field--item"><a href="/tag/hibernate" hreflang="en">hibernate</a></div> <div class="field--item"><a href="/tag/hunt" hreflang="en">hunt</a></div> <div class="field--item"><a href="/tag/ice" hreflang="en">ice</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/polar-bear" hreflang="en">polar bear</a></div> <div class="field--item"><a href="/tag/shore" hreflang="en">shore</a></div> </div> </div> <section> <article data-comment-user-id="0" id="comment-2510159" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1437507101"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>Amazing what a "cool" summer can do:<br /> <a href="http://www.bbc.com/news/science-environment-33594654">http://www.bbc.com/news/science-environment-33594654</a></p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2510159&amp;1=default&amp;2=en&amp;3=" token="ZICbtT7a4UKkIPCuWLleCo-t3lO3El8c4vMPbaCftTg"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">See Noevo (not verified)</span> on 21 Jul 2015 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2510159">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> <div class="indented"> <article data-comment-user-id="387" id="comment-2510160" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1438034352"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>Thank you for sharing this article. The polar bears in this research were studied in 2008 and 2009.</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2510160&amp;1=default&amp;2=en&amp;3=" token="tVZBc1tp3BFV51G_WuhQFX0zSBGWZ44kQ3fsOz4bwH4"></drupal-render-placeholder> </div> <footer> <em>By <a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a> on 27 Jul 2015 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2510160">#permalink</a></em> <article typeof="schema:Person" about="/author/dr-dolittle"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/author/dr-dolittle" hreflang="en"><img src="/files/styles/thumbnail/public/pictures/LogoForDolittleBlog-120x120_1.jpg?itok=ONp2irQS" width="100" height="100" alt="Profile picture for user dr. dolittle" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> <p class="visually-hidden">In reply to <a href="/comment/2510159#comment-2510159" class="permalink" rel="bookmark" hreflang="en"></a> by <span lang="" typeof="schema:Person" property="schema:name" datatype="">See Noevo (not verified)</span></p> </footer> </article> </div> <article data-comment-user-id="0" id="comment-2510161" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1439541752"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>The summer will be amazing.</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2510161&amp;1=default&amp;2=en&amp;3=" token="ON4zDkx43OXcFR016SqGvkzRBcJZViN7SOHB5KjAiaY"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">Chloe (not verified)</span> on 14 Aug 2015 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2510161">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/lifelines/2015/07/21/polar-bear-survival-during-summer%23comment-form">Log in</a> to post comments</li></ul> Tue, 21 Jul 2015 00:41:04 +0000 dr. dolittle 150318 at https://scienceblogs.com Passing rewarming saves energy https://scienceblogs.com/lifelines/2015/02/05/passing-rewarming-saves-energy <span>Passing rewarming saves energy</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><div style="width: 449px;display:block;margin:0 auto;"><a href="/files/lifelines/files/2015/02/goulds-lib.jpg"><img class=" wp-image-2653" src="/files/lifelines/files/2015/02/goulds-lib.jpg" alt="Image of Gould's long-eared bat from http://www.wiresnr.org/Microbats.html Image by: Lib Ruytenberg " width="439" height="269" /></a> Image of Gould's long-eared bat from <a href="http://www.wiresnr.org/Microbats.html">http://www.wiresnr.org/Microbats.html</a><br />Image by: Lib Ruytenberg </div> <p>I came across a neat study published recently in the <em>American Journal of Physiology - Regulatory, Integrative and Comparative Physiology</em> which examined how bats arouse from hibernation, a period during which their body temperature and metabolism are low. To minimize the high energetic costs of warming up during arousal, bats use solar radiation or take advantage of fluctuations in the ambient temperatures (i.e. environmental).</p> <p>Researchers studied hibernating long-eared bats (<em>Nyctophilus gouldi</em>) to learn how increasing the ambient temperature (i.e. atmospheric) affected heart rate and metabolism in comparison to arousal in a constant low ambient temperature environment. What they found was that heart rate and metabolism remained low for a longer period of time and gradually increased as the ambient temperatures were likewise increased. In contrast, the animals that actively aroused in low ambient temperatures had higher heart rates and metabolisms.These findings show that passive rewarming does conserve energy and arousal time in the bats resulting in less stress on the cardiovascular system.</p> <p>I wonder if passive rewarming could help bats afflicted with white-nose syndrome conserve energy and perhaps increase survival?</p> <p><a href="http://scienceblogs.com/lifelines/2011/01/05/north-american-bats-face-possi/">White Nose Syndrome Part 1</a></p> <p><a href="http://scienceblogs.com/lifelines/2011/06/16/white-nose-syndrome-revisite/">White Nose Syndrome Part 2</a></p> <p><strong>Source:</strong></p> <div class="highwire-cite-authors"><span class="highwire-citation-authors"><span class="highwire-citation-authors"><span class="highwire-citation-author first article-author-popup-processed has-tooltip" title="" data-delta="0"><span class="nlm-surname">Currie</span> SE</span>, <span class="highwire-citation-author article-author-popup-processed has-tooltip" title="" data-delta="1"><span class="nlm-surname">Noy</span> K</span>, <span class="highwire-citation-author article-author-popup-processed has-tooltip" title="" data-delta="2"><span class="nlm-surname">Geiser F. Passive rewarming from torpor in hibernating bats: minimizing metabolic costs and cardiac demands. <em>American Journal of Physiology- Regulatory, Integrative and Comparative Physiology.  </em>Published November 19, 2014. <span class="highwire-cite-metadata-doi"><span class="label">DOI:</span> 10.1152/ajpregu.00341.2014 </span><br /> </span></span></span></span> <h1 id="page-title" class="highwire-cite-title"></h1> </div> </div> <span><a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a></span> <span>Thu, 02/05/2015 - 12:45</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/life-science-0" hreflang="en">Life Science</a></div> <div class="field--item"><a href="/tag/bat" hreflang="en">bat</a></div> <div class="field--item"><a href="/tag/cardiovascular" hreflang="en">Cardiovascular</a></div> <div class="field--item"><a href="/tag/heart-rate" hreflang="en">heart rate</a></div> <div class="field--item"><a href="/tag/hibernation" hreflang="en">hibernation</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/torpor" hreflang="en">torpor</a></div> <div class="field--item"><a href="/tag/warm" hreflang="en">warm</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/lifelines/2015/02/05/passing-rewarming-saves-energy%23comment-form">Log in</a> to post comments</li></ul> Thu, 05 Feb 2015 17:45:16 +0000 dr. dolittle 150279 at https://scienceblogs.com Life, Death, and ERVs https://scienceblogs.com/seed/2014/12/01/life-death-and-ervs <span>Life, Death, and ERVs</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p>In a phenomenon known as Peto's paradox, large mammals do not develop cancer more often than small mammals, despite having more cells that could go haywire. On Life Lines, Dr. Dolittle writes "Some researchers suggested that perhaps smaller animals developed more oxidative stress as a result of having higher metabolisms. Others proposed that perhaps larger animals have more genes that suppress tumors." But a new hypothesis argues that large mammals have <a title="Why big animals do not have higher cancer risks" href="http://scienceblogs.com/lifelines/2014/09/26/why-big-animals-do-not-have-higher-cancer-risks/">evolved to minimize the activity of ERVs</a>, which are ancient viral elements integrated into our DNA. Active ERVs can cause cancer and possibly other diseases; mice exhibit about 3300 active ERVs, while humans exhibit about 350. On the blog known as ERV, Abbie Smith writes "some of the young ERVs in humans, the ones that can still code for a protein here and there, are reactivated in HIV+ patients." Researchers are considering targeting these ERVs in order to combat HIV; as Abbie writes, "You could train the HIV+ individuals immune system to ‘see’ the ERV components in an HIV infected CD4+ T-cell, and BAM! Kill the HIV infected cell!" But she warns that other ERV components are expressed in many normal human cells, and <a title="ERVs vs HIV– Maybe a bad idea" href="http://scienceblogs.com/erv/2014/09/24/ervs-vs-hiv-maybe-a-bad-idea/">teaching our immune system to target them</a> might be a very bad idea.</p> </div> <span><a title="View user profile." href="/author/milhayser" lang="" about="/author/milhayser" typeof="schema:Person" property="schema:name" datatype="">milhayser</a></span> <span>Mon, 12/01/2014 - 07:55</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/misc" hreflang="en">Misc</a></div> <div class="field--item"><a href="/tag/body-size" hreflang="en">body size</a></div> <div class="field--item"><a href="/tag/cancer" hreflang="en">cancer</a></div> <div class="field--item"><a href="/tag/dna" hreflang="en">DNA</a></div> <div class="field--item"><a href="/tag/ervs" hreflang="en">ERVs</a></div> <div class="field--item"><a href="/tag/hiv" hreflang="en">hiv</a></div> <div class="field--item"><a href="/tag/immune-system" hreflang="en">Immune system</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/oxidative-stress" hreflang="en">oxidative stress</a></div> <div class="field--item"><a href="/tag/petos-paradox" hreflang="en">Peto&#039;s Paradox</a></div> <div class="field--item"><a href="/tag/tumors" hreflang="en">Tumors</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/seed/2014/12/01/life-death-and-ervs%23comment-form">Log in</a> to post comments</li></ul> Mon, 01 Dec 2014 12:55:01 +0000 milhayser 69226 at https://scienceblogs.com Eyeless Mexican cavefish lost metabolic circadian rhythm https://scienceblogs.com/lifelines/2014/09/25/eyeless-mexican-cavefish-lost-metabolic-circadian-rhythm <span>Eyeless Mexican cavefish lost metabolic circadian rhythm</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><div style="width: 627px;display:block;margin:0 auto;"><a href="/files/lifelines/files/2014/09/Astyanax-mexicanus-blind-HJ-Chen.jpg"><img class="size-full wp-image-2561" src="/files/lifelines/files/2014/09/Astyanax-mexicanus-blind-HJ-Chen.jpg" alt="Image of eyeless Mexican tetra fish from www.seriouslyfish.com by H-J Chen. " width="617" height="410" /></a> Image of eyeless Mexican tetra fish from <a href="http://www.seriouslyfish.com">www.seriouslyfish.com</a> by H-J Chen. </div> <p>The metabolism of most animals follows a circadian rhythm that differs between the day and night. Mexican cavefish living in constant darkness, lost this circadian rhythm some time ago. In a newly published study in PLOS ONE, researchers compared the metabolic rate of both cave- and surface-dwelling Mexican tetra fish (<em>Astyanax mexicanus</em>). They hypothesized that since the fish living in each location naturally experience differences in food, predation as well as exposure to daily light fluctuations, they might also have different metabolic needs. When they exposed surface-dwelling fish to constant darkness, the circadian rhythm in terms of metabolism was consistent with oxygen demands normally seen in the daytime resulting in the expenditure of 38% more energy than the cave-dwelling fish. In contrast, the eyeless cave-dwelling fish do not have a metabolic circadian rhythm which the researchers say conserves 27% of their energy in comparison to surface fish. In a quote published in Discovery News, lead study author Dr. Damian Moran said, "These cave fish are living in an environment without light, without the circadian presence of food or predators, they've got nothing to get ready for, so it looks like they've just chopped away this increase in anticipation for the day." The study authors suggest that conserving energy is important for life in a cave where food may be scarce.</p> <p><strong>Sources:</strong><br /> Moran D, Softley R, Warrant EJ. Eyeless Mexican Cavefish Save Energy by Eliminating the Circadian Rhythm in Metabolism. PLOS ONE. September 24, 2014. DOI: 10.1371/journal.pone.0107877</p> <p><a href="http://news.discovery.com/animals/blind-cavefish-ditches-circadian-rhythm-to-save-energy-140925.htm">Discovery News</a></p> </div> <span><a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a></span> <span>Thu, 09/25/2014 - 11:08</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/life-science-0" hreflang="en">Life Science</a></div> <div class="field--item"><a href="/tag/cave" hreflang="en">cave</a></div> <div class="field--item"><a href="/tag/circadian" hreflang="en">circadian</a></div> <div class="field--item"><a href="/tag/dark" hreflang="en">dark</a></div> <div class="field--item"><a href="/tag/energy-0" hreflang="en">energy</a></div> <div class="field--item"><a href="/tag/eye" hreflang="en">eye</a></div> <div class="field--item"><a href="/tag/fish" hreflang="en">fish</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/mexican" hreflang="en">Mexican</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/lifelines/2014/09/25/eyeless-mexican-cavefish-lost-metabolic-circadian-rhythm%23comment-form">Log in</a> to post comments</li></ul> Thu, 25 Sep 2014 15:08:54 +0000 dr. dolittle 150244 at https://scienceblogs.com Last Week on ResearchBlogging.org https://scienceblogs.com/seed/2014/03/31/last-week-on-researchblogging-org-3 <span>Last Week on ResearchBlogging.org</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p>Scientists use a 'gene gun' to insert a <a title="GM wheat resists infection by the destructive take-all fungus" href="http://www.molecularscribe.com/gm-wheat-resists-infection-by-the-destructive-take-all-fungus/">gene from a flowering plant called rockcress</a> into the cells of wheat seeds. The genetically modified wheat became more resistant to a fungus called take-all, which in real life can cause "a 40-60% reduction in wheat yields."</p> <p>T-cells from six HIV+ patients were removed from their bodies, treated with a zinc-finger nuclease designed to<a title="Gene Editing As A Treatment for HIV" href="http://www.united-academics.org/magazine/health-medicine/gene-editing-as-a-treatment-for-hiv/"> snip a gene out of the cell's DNA</a>, and put back in the patients.  Removal of the gene mimics a naturally occurring mutation which confers resistance to the HIV virus.  But only 25% of the treated cells showed evidence of being successfully edited.</p> <p>Researchers "use time-resolved X-ray microtomography to visualize the muscles and hinges in three-dimensions" of fly wings, modelling the complex <a title="How Do Flies Fly?" href="http://blogs.plos.org/biologue/2014/03/25/flies-fly/">physical processes that enable flies' flight</a>.</p> <p>Even with the cost of building new energy storage infrastructure, <a title="Wind Industry, Even With Energy Storage Costs, Is Sustainable" href="http://dailyfusion.net/2014/03/wind-industry-energetically-sustainable-27447/">wind energy will continue to offer a net gain of power</a>.  Plus: wind produces enough surplus electricity to offer 72 hours of backup power (vs. 24 hours for solar panels).  Researchers say that the industry of onshore wind turbines can "double in size each year—and still maintain an energy surplus."</p> <p>Researchers cremated the remains of young piglets to investigate why there's <a title="PIGS ON THE PYRE- SOLVING CREMATION MYSTERIES" href="http://bonesdontlie.wordpress.com/2014/03/25/pigs-on-the-pyre-solving-cremation-mysteries/">little evidence of high infant mortality</a> in the archaeological record. To no avail.</p> <p>Men in 'traditional' marriages (whose wives are not employed) are more likely to <a title="Never the earner, always the bride: How male breadwinners view women in the workplace" href="http://bps-occupational-digest.blogspot.com/2014/03/never-earner-always-bride-how-male.html">look negatively upon women in the workplace</a>.</p> <p>Regardless of the structural integrity of a shoulder (rotator cuff) repair, patients have <a title=" Fixed or Failed Cuff Repair: What Difference Does it Make?" href="http://www.sportsmedres.org/2014/03/fixed-or-failed-cuff-repair-what.html">improved function and reduced pain after surgery</a>.</p> <p>Stem cells are influenced by <a title="Stem cell memories influence their fate" href="http://www.stemcellsfreak.com/2014/03/stem-cell-memories.html">the rigidity of the substrate they grew up on</a>: "spending 10 days on a particular bed leads to irreversible future differentiation of the stem cells into stiff-environment-loving bone or soft-loving fat cells."  That could lead to considerable demand for a new scaffolding material "based on a biocompatible silk-alginate hydrogel" which can be made to <a title="Adjustable scaffolds promote stem cell growth" href="http://www.stemcellsfreak.com/2014/03/soft-flexible-stem-cell-scaffold.html">varying standards of firmness</a>.</p> <p>By appearing to tap test subjects on the hand with a small hammer while playing the recorded sounds of a hammer tapping stone, researchers made people <a title="The power of sound" href="http://dyslectern.info/2014/03/30/the-power-of-sound/">feel their hands were more stone-like</a> (or <a title="Scientists Convince People Their Hands Are Rocks" href="http://blogs.discovermagazine.com/inkfish/2014/03/28/scientists-convince-people-their-hands-are-rocks/">numb</a>).</p> <p>A gene coincidentally named FAT10 ( for F Adjacent Transcript) actually "regulates lipid metabolism and longevity," and model mice who lacked the gene were leaner, <a title="New Target To Treat Obesity And Age-Related Diseases" href="http://www.united-academics.org/magazine/health-medicine/new-target-to-treat-obesity-and-age-related-diseases/">had a faster metabolism, and lived up to 20% longer</a>.</p> <p><a title="Stem cell-derived pancreatic cells treat diabetes in mice Read more: http://www.stemcellsfreak.com/2014/03/stem-cell-derived-pancreatic-cells.html#ixzz2xbMLNEqS" href="http://www.stemcellsfreak.com/2014/03/stem-cell-derived-pancreatic-cells.html">Encapsulating immature pancreatic cells</a> grown from human stem cells and implanting them under the skin of mice showed the cells could produce insulin whenever needed and reduce diabetic symptoms.</p> <p>The CDC revised it autism prevalence rate upward again; in 2010 about <a title="The new CDC autism prevalence rate" href="http://questioning-answers.blogspot.com/2014/03/the-new-cdc-autism-prevalence-rate.html">1 in 68 eight-year-olds had an autism spectrum disorder</a>.</p> <p>At age six, children award beneficial resources to members of their 'in-group;' at age eight they also <a title="Kids Come to Like Their Own Before They Dislike “Outsiders”" href="http://www.psychologicalscience.org/index.php/publications/observer/obsonline/kids-come-to-like-their-own-before-they-dislike-outsiders.html">assign harmful or negative resources to members of an 'out-group.'</a></p> <p>People with OCD were less likely than controls to believe they could influence a light bulb by pressing a space bar whenever they want. The light bulb <a title="The Slippery Question of Control in OCD" href="http://gardenofthemind.com/2014/03/27/the-slippery-question-of-control-in-ocd/">blinked randomly on and off</a>.</p> <p>A virus affecting crickets not only sterilizes them, but makes them more eager to initiate courtship. Males perhaps uninhibited by the virus would start <a title="Infected with Love: A Viral Aphrodisiac in Crickets" href="http://www.scilogs.com/next_regeneration/infected-with-love-a-viral-aphrodisiac-in-crickets/">playing a courtship song for a female</a> much sooner than their healthy peers.  Intimacy may be <a title="STD puts crickets in the mood" href="http://nittygrittyscience.com/2014/03/26/std-puts-crickets-in-the-mood/">the virus's way of spreading</a>.</p> <p>Within the ultrapure water purification system of a nuclear reactor, scientists found <a title="The microbial mystery at the Hungarian power plant" href="http://microbepost.org/2014/03/26/the-microbial-mystery-at-the-hungarian-power-plant/">oligotrophic bacteria, including new species</a>, growing in biofilms "visible to the naked eye" on ceramic filter surfaces.</p> </div> <span><a title="View user profile." href="/author/milhayser" lang="" about="/author/milhayser" typeof="schema:Person" property="schema:name" datatype="">milhayser</a></span> <span>Mon, 03/31/2014 - 14:57</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/misc" hreflang="en">Misc</a></div> <div class="field--item"><a href="/tag/autism" hreflang="en">autism</a></div> <div class="field--item"><a href="/tag/bacteria" hreflang="en">bacteria</a></div> <div class="field--item"><a href="/tag/control" hreflang="en">control</a></div> <div class="field--item"><a href="/tag/courtship" hreflang="en">courtship</a></div> <div class="field--item"><a href="/tag/cremation" hreflang="en">Cremation</a></div> <div class="field--item"><a href="/tag/crickets" hreflang="en">crickets</a></div> <div class="field--item"><a href="/tag/diabetes" hreflang="en">diabetes</a></div> <div class="field--item"><a href="/tag/flies" hreflang="en">flies</a></div> <div class="field--item"><a href="/tag/fungus" hreflang="en">fungus</a></div> <div class="field--item"><a href="/tag/gene-editing" hreflang="en">Gene Editing</a></div> <div class="field--item"><a href="/tag/gmo-0" hreflang="en">GMO</a></div> <div class="field--item"><a href="/tag/hiv" hreflang="en">hiv</a></div> <div class="field--item"><a href="/tag/infant-mortality" hreflang="en">Infant Mortality</a></div> <div class="field--item"><a href="/tag/insulin" hreflang="en">insulin</a></div> <div class="field--item"><a href="/tag/longevity" hreflang="en">longevity</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/ocd" hreflang="en">OCD</a></div> <div class="field--item"><a href="/tag/sexism" hreflang="en">sexism</a></div> <div class="field--item"><a href="/tag/stem-cells-substrates" hreflang="en">Stem Cells Substrates</a></div> <div class="field--item"><a href="/tag/wheat" hreflang="en">wheat</a></div> <div class="field--item"><a href="/tag/wind-energy" hreflang="en">wind energy</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/seed/2014/03/31/last-week-on-researchblogging-org-3%23comment-form">Log in</a> to post comments</li></ul> Mon, 31 Mar 2014 18:57:04 +0000 milhayser 69215 at https://scienceblogs.com Sharks have more proteins in common with humans than zebrafish! https://scienceblogs.com/lifelines/2013/12/03/sharks-have-more-proteins-in-common-with-humans-than-zebrafish <span>Sharks have more proteins in common with humans than zebrafish!</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><div style="width: 570px;display:block;margin:0 auto;"><a href="/files/lifelines/files/2013/12/800px-Carcharodon_carcharias.jpg"><img class=" wp-image-2020 " alt="Image of a great white shark from Wikimedia Commons." src="/files/lifelines/files/2013/12/800px-Carcharodon_carcharias.jpg" width="560" height="420" /></a> Image of a great white shark from Wikimedia Commons. </div> <p>Dr. Michael Stanhope from Cornell University has discovered that great white sharks actually share more proteins involved in metabolism and biochemistry in common with humans than zebrafish, a common fish model used in biomedical research. They made this discovery by sequencing the transcriptome of a heart isolated from a great white shark. I find it fascinating that sharks have more proteins in common with mammals than with bony fish, even though sharks and bony fish are not very closely related.</p> <p style="text-align: center;"><a href="/files/lifelines/files/2013/12/142010_Chordate_phylogeny.jpg"><img class="aligncenter wp-image-2021" alt="142010_Chordate_phylogeny" src="/files/lifelines/files/2013/12/142010_Chordate_phylogeny.jpg" width="511" height="336" /></a></p> <p><strong>Source:<br /> </strong><br /> <a href="http://www.news.cornell.edu/stories/2013/12/shark-human-proteins-are-surprisingly-similar">Cornell University Press</a></p> </div> <span><a title="View user profile." href="/author/dr-dolittle" lang="" about="/author/dr-dolittle" typeof="schema:Person" property="schema:name" datatype="">dr. dolittle</a></span> <span>Tue, 12/03/2013 - 12:43</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/life-science-0" hreflang="en">Life Science</a></div> <div class="field--item"><a href="/tag/biomedical-research" hreflang="en">biomedical research</a></div> <div class="field--item"><a href="/tag/dna" hreflang="en">DNA</a></div> <div class="field--item"><a href="/tag/genes" hreflang="en">genes</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/protein" hreflang="en">protein</a></div> <div class="field--item"><a href="/tag/shark" hreflang="en">shark</a></div> <div class="field--item"><a href="/tag/zebrafish" hreflang="en">zebrafish</a></div> </div> </div> <section> <article data-comment-user-id="0" id="comment-2509178" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1386137066"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>Alright all you evolutionary biologists, I expect to see you all replace your zebrafish tanks for shark tanks!</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2509178&amp;1=default&amp;2=en&amp;3=" token="LgeMk7pO_IrkmY8pb7UC3VYXFbwCuEbBBoC45B-QENA"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">BCM (not verified)</span> on 04 Dec 2013 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2509178">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> <article data-comment-user-id="0" id="comment-2509179" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1386183318"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>someone is gonna use this to try to discredit evolution again</p> <p>anyway, just heart transcriptome? what if it was different in other organs? we need more sharks to sample</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2509179&amp;1=default&amp;2=en&amp;3=" token="e5eyFf8JSzrNNmb6TBp-_Gjng4Sxtam_RVXhdBhUfss"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">vince (not verified)</span> on 04 Dec 2013 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2509179">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/lifelines/2013/12/03/sharks-have-more-proteins-in-common-with-humans-than-zebrafish%23comment-form">Log in</a> to post comments</li></ul> Tue, 03 Dec 2013 17:43:47 +0000 dr. dolittle 150152 at https://scienceblogs.com Endlessly Adaptable Animals https://scienceblogs.com/seed/2013/04/30/endlessly-adaptable-animals <span>Endlessly Adaptable Animals</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p>Dr. Dolittle spent a few days at the Experimental Biology meeting of the American Physiological Society, learning incredible facts about animal adaptability. In the Sunday session, researchers showed that metabolic byproducts called <a title="Experimental Biology – Sunday" href="http://scienceblogs.com/lifelines/2013/04/22/experimental-biology-sunday/" target="_blank">ketones can protect against seizures</a> caused by hyperbaric oxygen therapy, while seal pups, who fast for up to three months once weaned, increase their insulin resistance and become effectively diabetic. Monday taught us that insects lack lungs, instead exchanging gas through <a title="Experimental Biology – Monday" href="http://scienceblogs.com/lifelines/2013/04/23/experimental-biology-monday/" target="_blank">tiny valves called spiracles</a> along their abdomen, while a Burmese python, after eating a meal up to 25% of its body weight, develops an enlarged heart to facilitate metabolism. From Tuesday Dr. Dolittle reports the pitfalls of doping elephants with LSD, and that <a title="Experimental Biology – Tuesday" href="http://scienceblogs.com/lifelines/2013/04/23/experimental-biology-tuesday/" target="_blank">specialized mitochondria supercharge hummingbird wings</a> and rattlesnake tails. There are even more findings about low-oxygen, or hypoxic, adaptations, including turtle shells that prevent lactic acid buildup, and one researcher who raised geese so she could train them to fly in a wind tunnel while wearing gas masks.</p> </div> <span><a title="View user profile." href="/author/milhayser" lang="" about="/author/milhayser" typeof="schema:Person" property="schema:name" datatype="">milhayser</a></span> <span>Tue, 04/30/2013 - 02:57</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/animals" hreflang="en">animals</a></div> <div class="field--item"><a href="/tag/diabetes" hreflang="en">diabetes</a></div> <div class="field--item"><a href="/tag/geese" hreflang="en">geese</a></div> <div class="field--item"><a href="/tag/hypoxia" hreflang="en">hypoxia</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/mitochondria" hreflang="en">mitochondria</a></div> </div> </div> <section> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/seed/2013/04/30/endlessly-adaptable-animals%23comment-form">Log in</a> to post comments</li></ul> Tue, 30 Apr 2013 06:57:57 +0000 milhayser 69174 at https://scienceblogs.com From Metabolism to Oncogenes and Back - Part II https://scienceblogs.com/transcript/2008/03/21/from-metabolism-to-oncogenes-a-1 <span>From Metabolism to Oncogenes and Back - Part II</span> <div class="field field--name-body field--type-text-with-summary field--label-hidden field--item"><p><a href="http://scienceblogs.com/transcript/2008/03/from_metabolism_to_oncogenes_a.php">Last time</a> I told you about how the view of cancer switched from the perspective of metabolism to oncogenes. Today we'll see how recent developments have placed the spotlight back on metabolic pathways.</p> <p>I'll begin this tale with a quote from <a href="http://dx.doi.org/10.1016/j.ceb.2006.09.005">a review written by Andrew M Arshama and Thomas P Neufeld</a>:</p> <blockquote><p>The TOR (target of rapamycin) signaling pathway has been the subject of a 30-year-long reverse engineering project, beginning in the 1970s when the macrocyclic lactone antifungal compound rapamycin was purified from soil bacteria found on the Pacific island of Rapa Nui, famous for its moai (giant carved heads). </p></blockquote> <!--more--><p>The story begins with this funny compound that was named after the island of Rapa Nui, aka Easter Island. Rapamycin had very interesting properties, it not only acted as an antifungal agent but inhibited the immune system and slowed down cell division in mammalian organisms. In 1991 it was discovered that the target of rapamycin in yeast was a kinase that was then named TOR, for "<u>t</u>arget <u>o</u>f <u>r</u>apamycin". Curiously, TOR was present in mammals, vertebrates, plants ... it was a pretty old protein, and was the central player in an ancient signaling cascade. </p> <p>A couple of digressions and then we'll move on. </p> <p>First, it is now known that rapamycin inhibits TOR activity by binding a complex formed between TOR (or mTOR in mammals) and a second protein called FKBP12. Second, kinases are enzymes that can add phosphates to specific locations on other proteins. Often the addition or removal of a phosphate will change the activity of a protein. As mentioned in Part I, kinases often phosphorylate other kinases. When one kinase activates a second kinase which in turn activates a third, this is known as a signaling cascade. Of course other types of proteins can act in such a cascade (<a href="http://scienceblogs.com/transcript/2006/08/a_little_bit_on_microtubules_a.php">G-proteins</a> for example), but usually these "pathways" are full of kinases. </p> <p>OK back to the story.</p> <p>While some scientists played with rapamycin, other investigators were asking a different question: <strong>what regulates cell size?</strong> A very academic sounding question, but one that gave very intriguing answers. When cells duplicate their DNA <strong>and</strong> accumulate enough cytoplasm, only then do they divide. Cytoplasm is the cellular goo found inside the cell and outside of the nucleus. It's jam-packed with proteins, about 300 mg/ml, and contains everything that the cell needs, including ribosomes, sugars, organelles. It turns out that cells closely monitor their size and quantity of cytoplasm. This assement of size is accomplished by the activity of a bucket full of genes that are thought to form some sensing device. From a few genetic screens, it appeared that some mutant cells didn't wait to make enough cytoplasm before dividing. These cells had normal cytoplasm, just a lot less of it - in other words these mutants were smaller. The fundamental questions became: </p> <p>1) How do cells sense the total amount of cytoplasmic components (proteins, ribosomes etc.)?<br /> 2) How do cells regulate the production and destruction of these cytoplasmic components?</p> <p>Curiously, it was not only the size of the cells that were affected, but also the size of the animal. For example, two mutant flies that had small cells, also had small body sizes. The mutated genes were named hamartin and tuberin and encoded very conserved genes. Many other signaling molecules were picked up in those genetic screens performed in flies, including genes involved in insulin production and detection. From the insulin result you might be thinking - <strong>Aha so cells that are messed up in sensing sugar don't grow well</strong>. And indeed, for many years, researchers identified mutants that acted as if they were subjected to starvation in the presence of normal levels of nutrients. To grow properly, cells need amino acids, sugars, phosphates etc. If you starved yeast, they stop making protein and stop dividing. But it wasn't just a case of cells passively taking in nutrients and growing; instead, it seemed like cells had some sophisticated method of measuring the nutrient availability. Based on this <strong>nutrient sensor</strong> the cells decide whether </p> <p>a) to grow, make proteins, divide and be happy<br /> b) to stop protein synthesis, conserve energy and turn off cell division<br /> c) and if things were really bad, to make protective proteins, eat its excess organelles and really prepare for the upcoming disaster. </p> <p>Over the years, researchers found mutants that acted as if they were being starved even while in the midst of plenty. One such mutant identified in yeast was a protein called Rheb. This <a href="http://scienceblogs.com/transcript/2006/08/a_little_bit_on_microtubules_a.php">G-protein</a> was similar in sequence to Ras, a nasty oncogene, and seemed to be required for the cell's ability to sense its metabolic condition. Mutant cells that lacked Rheb were stressed out even when there was no need. They stopped making amino acids, they shut down protein production and started to eat their own organelles (the process of eating yourself is known as autophagy). </p> <p>So lets sum it up:</p> <p>- rapamycin: stops cells from growing and dividing<br /> - tuberin hamartin mutants: small cells (non-functioning cell-size sensor?)<br /> - insulin mutants: small cells (non-functioning cell-size sensor? non-functioning metabolic sensor?)<br /> - Rheb mutants: stressed out cells (overactive "lack of nutrient" sensor?)</p> <p>Then some scientists started to add the facts together and thought that perhaps rapamycin had something to do with this nutrient/cell-size sensor? Sure enough, TOR mutants were paranoid little fellows. As with the Rheb mutants, TOR mutants acted as if Armageddon were upon them while swimming in a sea of milk and honey.</p> <p>So what's the link between metabolic sensor mutants and size sensor mutants? Biochemists filled in all the connections between the players discovered by the geneticists. It turned out that all these genes were part of an evolutionarily conserved signaling pathway that acted to sense all sorts of metabolic levels. Metablic and cellular function information would be funneled into one master signal integrator, TOR, that would then turn on specific cellular programs. If the signaling pathway was overactive, cells would act as if they were swimming in ample amounts of nutrients, even when they weren't, and would divide before they had produced enough cytoplasm, leading to the small cell/small animal phenotype. If the signaling pathway was dampened, cells would act as if there wasn't enough and turned on all these stress signals. It looked like the TOR signaling pathway was the master metabolic sensory system of the cell.</p> <p>About the same time as all these pieces of the puzzle fell together, other scientists discovered that quite a few of the nastiest tumor suppressors and proto-oncogenes also affected the activity of the TOR pathway. Some examples are Phospho-inositide-3 kinase (PI3K), Akt and the phosphoinosited phosphotase PTEN, one of the most important tumor suppressors. In addition, when the mammalian homologs of the hamartin and tuberin genes were mutated, the result was ... <a href="http://en.wikipedia.org/wiki/Tuberous_sclerosis">tuberous sclerosis</a>, a disease associated with the apearance of numerous benign tumors. PI3K itself was regulated by growth factors and their receptors. Now the circle was complete. </p> <p>A big picture of cell division was coming into focus. Cells need to sense many things before they can begin to divide. They need to take into account whether they have enough metabolites to make more proteins, ribosomes, and all the goodies needed to furnish the two new cells. In addition, the cells of multicellular organisms must work together. A cell can only divide if the larger organism needs more cells. There was no need for the cell to activate the cell division program if there was no need to replace tissue or for the multicellular organism to grow. </p> <p>So let's draw out a diagram of what we know so far. When one set of proteins activates the next set of proteins, the connection is represented by an arrow. When one set of proteins (or factors) inhibits the next set, the connection is represented by a line ending with a blunt end. </p> <p><img src="http://scienceblogs.com/transcript/wp-content/blogs.dir/365/files/2012/04/i-18698b62f9e5418d9da2a3e6d1ffc831-TOR Signals.jpg" alt="i-18698b62f9e5418d9da2a3e6d1ffc831-TOR Signals.jpg" /></p> <p>Note that the most mysterious part of this pathway is how metabolites affect the tuberous sclerosis proteins (TSC1 and TSC2).</p> <p>As you can guess, this signaling pathway is at the heart of what the cell has to do: whether to live a swinger's life full of fun and reproduction, a peaceful life of cellular-retirement, or a stress-filled life of poverty. Signals used by the cell to make this decision come from both metabolic sensors and cell-to-cell communication sensors. If a mutation arises in a gene on any of these branch points, you could wind up with an over-stimulated cell that divides way too fast (i.e. cancer). </p> <p>As you can see we've come full circle. <strong>Cancer was a problem with signals - those that sensed metabolites or those that sensed cell-to-cell communication.</strong></p> <p><strong>Some further notes</strong>: Judging from this diagram, you might think that Rapamycin, which inhibits TOR activity, must be a fabulous chemotherapeutic agent. But it isn't. Why? Well it turns out that there is a major feedback loop in this pathway. Basically TOR inhibition activates Akt. You don't want to mess with Akt: it's a major oncogene and its activation regulates many pathways that promote cell division.</p> <p><strong>Enter Ribosomes</strong></p> <p>Recently a lot of investigators have looked downstream of TOR to see how exactly it stimulates cell growth, in terms of how big cells get and in terms of how fast cells divide. And in an interesting twist, it seems as if TOR's main purpose is to regulate how the ribosome operates. First off, TOR signaling turns on the expression of ribosome proteins and ribosomal RNA. Since the ribosome is the main factory in the cell, it is no surprise that a regulator of cell size would also regulate ribosome production. But that's not all. <strong>Active TOR actually sits on ribosomes as they get ready to translate an mRNA into protein</strong>. This active TOR adds tons of phosphates directly to ribosomal proteins and even activates other kinases, such as S6 kinase, an enzyme that adds even more phosphates to the ribosome (S6 is a small ribosomal subunit). <strong>Yes, TOR activates a big phosphorylation orgy on the ribosome</strong>; however, it remains unclear what is the outcome of all these ribosomal phosphorylation events. </p> <p>In addition, TOR signaling promotes the ability of RNA unwinding proteins (aka helicases) to remove RNA folds from the start of certain transcripts. TOR accomplishes this task through eIF4E, a protein that I've written about before. eIF4E is a regulator mRNA translation. It binds to the cap present at the beginning of most transcripts and can recruit helicases (eIF4A and eIF4B). In the absence of TOR signaling, the 4E inhibitors (called 4EBPs) prevent eIF4E from recruiting the helicases to the start of the transcript. When TOR is active, it phosphorylates eIF4E inhibitors and turns them off. eIF4E recruits helicases and the ribosome can now translate the mRNA in question. Having told you all this, I will now say that TOR signaling normally doesn't affect the translation of most mRNAs, but it does have a profound effect on the translation of a small set of transcripts that contain extensive RNA folds right after the cap. And what are these transcripts? Here is the real kicker. Many are mRNAs from proto-oncogenes whose protein products are critical for promoting cell division. From very recent experiments in <a href="http://www.mcgill.ca/biochemistry/department/faculty/sonenberg/">Nahum Sonenberg's lab</a>, we found out that just increasing the level of eIF4E by two fold can lead to the over-expression of a whole group of proto-oncogenes like <em>myc</em>. In fact, many drugs that target eIF4E are in clinical trials for a variety of cancers. So in the end it looks like the cell's metabolic state could stimulate the translation of genes that promote cell division. How's that for a turn of events? </p> <p>In the next entry I'll talk about some of the newest TOR signaling papers (some published, and others soon to be published), and a surprisingly new connection between metabolism and cancer.</p> <p>Further notes:<br /> -I've been furiously typing this post in between experiments - I'll be correcting any typos over time. I'll also try to stick in some references here and in the previous entry as soon as I can get to it. Also feel free to add any extra info in the comments section. I didn't want to complicate this entry so note that I did not talk about TORC1 &amp; TORC2 or autophagy, or memory or any of the gadzillion processes affected by TOR signaling. </p> </div> <span><a title="View user profile." href="/author/apalazzo" lang="" about="/author/apalazzo" typeof="schema:Person" property="schema:name" datatype="">apalazzo</a></span> <span>Fri, 03/21/2008 - 03:56</span> <div class="field field--name-field-blog-tags field--type-entity-reference field--label-inline"> <div class="field--label">Tags</div> <div class="field--items"> <div class="field--item"><a href="/tag/pure-biology" hreflang="en">Pure Biology</a></div> <div class="field--item"><a href="/tag/cancer" hreflang="en">cancer</a></div> <div class="field--item"><a href="/tag/cell-signaling" hreflang="en">Cell-signaling</a></div> <div class="field--item"><a href="/tag/metabolism" hreflang="en">metabolism</a></div> <div class="field--item"><a href="/tag/oncogenes" hreflang="en">Oncogenes</a></div> <div class="field--item"><a href="/tag/rapamycin" hreflang="en">Rapamycin</a></div> <div class="field--item"><a href="/tag/tor" hreflang="en">TOR</a></div> </div> </div> <section> <article data-comment-user-id="0" id="comment-2440598" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1206182412"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>I have nothing to add rather than saying that this is really fantastic summary of the TOR story. Thanks for posting it, looking forward to your next entry.</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2440598&amp;1=default&amp;2=en&amp;3=" token="LA0sizmAVMT3PQRo9T9dzMjerENvWVV_vaUBAaUAyYM"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">juniorprof (not verified)</span> on 22 Mar 2008 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2440598">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> <article data-comment-user-id="0" id="comment-2440599" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1206192587"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>Great blog, thanks! Clear, interesting/appropriate details, nice style. Added to my regular rounds.</p> <p>(I was pointed here from ouroboros.wordpress.com.)</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2440599&amp;1=default&amp;2=en&amp;3=" token="mx7AtiHvpB58TAYoFIFavcPkRQQ98vOKVlYGr8EQMsc"></drupal-render-placeholder> </div> <footer> <em>By <a rel="nofollow" href="http://noozit.com/author/tim+lundeen" lang="" typeof="schema:Person" property="schema:name" datatype="">Tim Lundeen (not verified)</a> on 22 Mar 2008 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2440599">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> <article data-comment-user-id="0" id="comment-2440600" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1231217438"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>I am trying to make mTOR signalling understandeable for my non-biologist co-workers and your blog has helped me immensely - thanks! The pitfall of AKT upregulation at mTOR inhibition is substantial, but can be reduced if mentioned, that rapamycin (or analogs) cannot block the action of TORC2, which is the activator of AKT. Unfortunately at permanent addition of rapamycin, it can inhibit the formation of new TORC2, which may lead in consequence to the feedback loop you have mentioned - but at the late stage of the cancer when the drugs are administered, this might be your smallest concern...</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2440600&amp;1=default&amp;2=en&amp;3=" token="vs_3j7mXa44qRbXAUvqf0yy7PH3E1kJo3R66yBEYfvQ"></drupal-render-placeholder> </div> <footer> <em>By <span lang="" typeof="schema:Person" property="schema:name" datatype="">Axmann Judit (not verified)</span> on 05 Jan 2009 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2440600">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> <article data-comment-user-id="0" id="comment-2440601" class="js-comment comment-wrapper clearfix"> <mark class="hidden" data-comment-timestamp="1308273336"></mark> <div class="well"> <strong></strong> <div class="field field--name-comment-body field--type-text-long field--label-hidden field--item"><p>Some time before, I really needed to buy a car for my corporation but I didn't have enough money and could not order something. Thank God my sister proposed to get the <a href="http://bestfinance-blog.com/topics/personal-loans">personal loans</a> from trustworthy bank. So, I acted so and was satisfied with my student loan.</p> </div> <drupal-render-placeholder callback="comment.lazy_builders:renderLinks" arguments="0=2440601&amp;1=default&amp;2=en&amp;3=" token="MrcJh5LnOGwfQstjHvOTgbCIc8VOrxI8wl4V21CzY_0"></drupal-render-placeholder> </div> <footer> <em>By <a rel="nofollow" href="http://www.bestfinance-blog.com" lang="" typeof="schema:Person" property="schema:name" datatype="">Cherry34TANIA (not verified)</a> on 16 Jun 2011 <a href="https://scienceblogs.com/taxonomy/term/17813/feed#comment-2440601">#permalink</a></em> <article typeof="schema:Person" about="/user/0"> <div class="field field--name-user-picture field--type-image field--label-hidden field--item"> <a href="/user/0" hreflang="und"><img src="/files/styles/thumbnail/public/default_images/icon-user.png?itok=yQw_eG_q" width="100" height="100" alt="User Image" typeof="foaf:Image" class="img-responsive" /> </a> </div> </article> </footer> </article> </section> <ul class="links inline list-inline"><li class="comment-forbidden"><a href="/user/login?destination=/transcript/2008/03/21/from-metabolism-to-oncogenes-a-1%23comment-form">Log in</a> to post comments</li></ul> Fri, 21 Mar 2008 07:56:27 +0000 apalazzo 136239 at https://scienceblogs.com