genetic relatedness
razib | July 30, 2009An ancestry informative marker set for determining continental origin: validation
and extension using human genome diversity panels:
Results
In this study, genotypes from Human Genome Diversity Panel populations were used to further evaluate a 93 SNP AIM panel, a subset of the 128 AIMS set, for distinguishing continental origins. Using both model-based and relatively model-independent methods, we here confirm the ability of this AIM set to distinguish diverse population groups that were not previously evaluated. This study included multiple population groups from Oceana, South Asia, East…
razib | May 5, 2009In the comments below on the post on human population structure there was some request for a bigger global perspective. Below the fold I've placed a table with FST values which compare each population to the other. This an older population genetic statistic derived from the work of Sewall Wright, but you are almost certainly familiar with the talking point that "85% of variation is within races, and only 15% between." That is an FST insight. The higher the FST the greater the proportion of genetic variation which can be attributed to between population differences, so it serves as a rough…
razib | May 3, 2009I still remember when L. L. Cavalli-Sforza's The History and Geography of Human Genes was a candle in the dark, illuminating human history with slivers of genetic data laboriously gathered and analyzed over decades. We've come a long way. Dienekes points me to a new paper, Fine-scaled human genetic structure revealed by SNP microarrays:
We report an analysis of more than 240,000 loci genotyped using the Affymetrix SNP microarray in 554 individuals from 27 worldwide populations in Africa, Asia, and Europe. To provide a more extensive and complete sampling of human genetic variation, we have…
razib | April 29, 2009Haplotypic Background of a Private Allele at High Frequency in the Americas:
Recently, the observation of a high-frequency private allele, the 9-repeat allele at microsatellite D9S1120, in all sampled Native American and Western Beringian populations has been interpreted as evidence that all modern Native Americans descend primarily from a single founding population. However, this inference assumed that all copies of the 9-repeat allele were identical by descent and that the geographic distribution of this allele had not been influenced by natural selection. To investigate whether these…
razib | April 28, 2009Dan MacArthur has a post, Genetics of complex traits in Europeans and East Asians: similarities and differences:
With those goals in mind, you can expect to see many more GWAS of non-European populations over the next couple of years, and some explicit comparisons of the differing genetic architecture of complex traits between populations. Exciting times for those of us interested in the genetic and evolutionary basis of between-population differences...
This reminds me of A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction:…
razib | February 19, 2009Sheril's post, Chimpanzees Are NOT Pets!, is good. She notes:
1 Chimpanzees are wild animals. Animals that make good PETS like dogs and cats, have been domesticated for [thousands] of years. There has been selection on them against aggression, which is why a dog, unlike a wolf, will not automatically tear you to pieces. Anyone who has a pet chimpanzee for long enough will eventually no longer be able to control them and will either get a body part bitten off or will have to use extreme force to control them. Chimps live to be 50 years old and grow almost as big as a human male. They have…