How long before Sal Cordova quote mines this one?

Nature reports on this new paper that shows a major conflict resolving the fossil and molecular records of mammalian evolution. It's entitled, "Cretaceous eutherians and Laurasian origin for placental mammals near the K/T boundary" and the major finding is that mammals seem to have evolved largely after this boundary based on their discovery of fossil evidence of a new mammal. This isn't a new finding for the fossil record, but this study represents the largest fossil-based evolutionary tree to date.

However, this conflicts with the molecular record (the editorial gets the lead author's name incorrect - it's Beninda-Emonds - nature news coverage here) which constructs a evolutionary tree of 99% of mammals suggesting more than 40 mammals survived the Cretaceous period - ended by the mass extinction of the dinosaurs at the Cretaceous/Tertiary (K/T) boundary 65 million years ago . Their finding suggested that the end-cretaceous extinction event may not have provided the impetus for the expansion of mammalian species implied by the fossil record.

It's an interesting debate as the molecular and fossil records tend to conflict when it comes to the dates of branching along the evolutionary tree. And, because it's a debate, it's just a matter of time before it's quote-mined by the evolution denialists at Uncommon Descent. In particular, I would be concerned with passages such as these from the nature editorial.

Yawning gaps between molecular and palaeontological approaches to the dating of evolutionary landmarks have appeared ever since molecular approaches based on DNA sequences first became widely used about 15 years ago. When results differ, the molecular technique almost always pushes events further back than the fossil record. For example, some molecular studies estimate that multicellular animals arose about a billion years ago, but the fossil record goes back a mere 600 million years. Fossil plant spores date back 475 million years, but molecular dates put plants on land 700 million years ago.

And this passage:

But although Kevin Peterson of Dartmouth College in Hanover, New Hampshire, agrees that some groups' fossil records are too patchy to be trusted, he is scathing of the notion that the first animals could have gone unfossilized for nearly half a billion years. "To say that because the record is incomplete you can have a billion-year-old bilaterian is a woeful misunderstanding of the fossil record," he says.

Let's see if we can get in a pre-emptive strike. How much do you want to bet they will won't quote these paragraphs:

However, there are signs that this deep-running discord may be being resolved, at least in some cases. "Ten years ago the divide looked very sharp," says palaeontologist Mike Benton of the University of Bristol, UK. "But there's been a certain amount of movement both ways -- palaeontological and molecular people are moving towards one another."

That molecular dates are a little earlier is to be expected. DNA should record the moment that a lineage split, but the imperfections of the fossil record mean that the first preserved post-split organisms will date from later on. And there are some groups -- such as the microscopic, soft-bodied animals that make up about half the extant animal phyla -- that have no fossil record at all. "We should be willing to accept biases in the fossil record regarding certain types of animal," says Blair Hedges of Pennsylvania State University in University Park. Hedges has been among the most vigorous advocates of earlier DNA dates for major evolutionary splits, including those that produced the animals, the land plants, the fungi and mammals.

...

Benton sees hope in new statistical methods that can better account for uncertainty in both the timing of calibration points and measurements of evolutionary rates. In such treatments, both fossil and molecular dates go from being fixed points with error bars to being a range of probabilities. "The flexibility is hugely liberating," says Benton. "I see a glowing future for this."

Using such an approach, Peterson has obtained molecular dates for the origin of the animals that match their first appearance in the fossil record (K. J. Peterson & N. J. Butterfield, Proc. Natl. Acad. Sci. USA 102, 9547-9552; 2005). He presented his latest analyses this week at a meeting at the Royal Society in London. "All of the latest estimates are putting the division of the bilateria right in the Ediacaran," he says, referring to the geological period pre-dating the Cambrian explosion of about 540 million years ago. A group led by Emmanuel Douzery at the University of Montpelier in France has got similar results in the past few years. Hedges argues, however, that these more recent dates are the result of calibration errors.

Let's see what happens, but don't expect the denialists to miss the opportunity to use a scientific debate to castigate the science as a whole. Now, I'm not an evolutionary biologist, and I'll await commentary on this paper from some of those who have expertise on the topic - I'm unsure exactly why the discovery of this new Eutherian is such convincing evidence. But I do know an opportunity for a crank to latch onto a sentence out of context when I see one - this is just a matter of time.

More like this

A very important and truly wonderful paper in Nature described a tour-de-force analysis of the Mammalian Evolutionary Record, and draws the following two important conclusions: The diversification of the major groups of mammals occurred millions of years prior to the KT boundary event; and The…
A very important and truly wonderful paper in Nature described a tour-de-force analysis of the Mammalian Evolutionary Record, and draws the following two important conclusions: The diversification of the major groups of mammals occurred millions of years prior to the KT boundary event; and The…
As I mentioned earlier, there's a really interesting paper on mammal evolution in the latest issue of the journal Nature. The authors of the paper compiled a really fantastic sampling of molecular data that included data from about 99% of all currently known extant mammals. The data was then used…
tags: researchblogging.org, evolution, bird-dinosaur split, dinosaurs, birds, rocks-versus-clocks, fossil record, molecular clocks The first feathered dinosaur fossil found in China -- Sinosauropteryx. The feathers can be seen in the dark line running along the specimen's back. Image: Mick…

Sad, very sad. I want to respond to this with fascination and wonder. But all the time I'm aware of this nagging voice in the back of my mind telling me that any discussion of the significance of this for science will be drowned out by the sound of ignorant fundies getting their spines crushed by PZ Myers.

I think any quote mining here is, instead, an excellent doorway to expose people to how scientific controversy actually gets resolved in practice. Scientists publish papers in peer-reviewed journals and others react to those with papers of their own until a consensus emerges.

Persoanally, I have a deep distrust of "molecular clock" methods. The period after the K/T event was a very stressful one and it should have resulted in a much higher mutation rate. But if you postulate a constant mutation rate and project back through a period of increased mutation, you get exactly what we have here -- species appearing to be older than they actually are. It's all because your clock is wrong.

Molecular clocks are notoriously unreliable. One should expect that during periods of environmental change, the species there will change more rapidly (not due to an increase in mutation rate, but rather due to an increased chance of selecting beneficial mutations).

My personal opinion has always been that trying to use molecular clocks is not all that useful and shouldn't even be attempted. It's much more useful to place organisms on trees of relatedness than to try to place a date on the branches (because unless you have a fossil to calibrate each branch, at some level you're just handwaving).

I'm unsure exactly why the discovery of this new Eutherian is such convincing evidence.

I'm not a scientist (the only reason I'm posting is to get information), but my understanding of this article is that the new fossil is not the convincing evidence, but it is rather quite a minor part of the evidence brought forward for the timing of the split among placental mammals. The article relies, I believe, on the entirety of mammal fossils from the Cretaceous.

The period after the K/T event was a very stressful one and it should have resulted in a much higher mutation rate.

A minor quibble... the mutation rate *should* remain roughly the same, absent an elevated level of mutagenic factors... it's the selection rate that goes into overdrive during periods of stress.

Creationist logic:

1. Scientist faction X says mammals split 450 million years ago.
2. Scientist faction Y says they split a little before or after that date.
3. Therefore scientists cant agree on dates.
4. Therefore you cant trust scientists who say that life arose more than six thousand years ago, because even if the vast majority agree on this, it has been shown that scientists disagree. While the Word of God is, of course, infallable.

Mark, I believe PT commented on this some time ago (perhaps before you joined SciBlogs). Checking the archives turns up this post from April: Mammalian Macroevolution Muddle. There are probably a few more.

You may be predictinmg the past here...

True, this is not an unknown conflict. It's just I saw the way this most recent Nature editorial was written and thought, "gee, Sal Cordova would love this editorial".

It's an ongoing conflict, this most recent paper is just another example of it.

I agree that it is important for scientists to keep in mind how their quotes might be misunderstood by some (honestly or intentionally), especially when they're talking to journalists. In this case, I hope someone makes the point that we have two very different methods (fossil record, molecular clock) of estimating when evolutionary divergences occured. Having two essentially independent methods is good, even though it means sometimes you'll get conflicting answers which will lead to debate and, one hopes, more knowledge. With one method, no conflicts, no debates, but much less reliable answers (hmmm ... now what does that sound like?).