culture of science
ddobbs | March 15, 2010
We'll start with the science, cruise through J school, and end with healthcare reform or bust.
Genetic material
Willful ignorance is not an effective argument against personal genomics : Genetic Future Mr. McDonald spanks the frightened.
The American Scientist, meanwhile, takes a shot at Putting Genes in Perspective
Culture and the human genome From the excellent A Replicated Typo. (That's gene humor, is 'replicated typo.')
Going to J School
State of the Media, By the Numbers : CJR A review of a review: Columbia Journalism reviews Pew's "State of the Media" report. Eye-popping numbers and…
ddobbs | March 9, 2010
Jonah Lehrer's story on "Depression's Upside" has created quite a kerfuffle. The idea he explores â that depression creates an analytic, ruminative focus that generates useful insight â sits badly with quite a few people. It's not a brand-new idea, by any means; as Jonah notes, it goes back at least to Aristotle. But Jonah (who â disclosure department â is a friend; plus I write for the Times Magazine, where the piece was published) has stirred the pot with an update drawing from (among other things) a very long review paper published last year by psychiatric researchers Paul Andrews and…
jdupuis | March 4, 2010I'm away for a couple of days, so I thought I'd fill in a bit with an oldy-buy-goody from February 4, 2009. It ended up being the first of three parts, with the other two being here and here. As usual, the first part got the most readers and comments, with the two after that being decidedly less popular. Go figure.
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I was just going to call this post "On Blogging" but I decided I like Robert Scoble's rather provocative statement better. This is not to say that I agree with his rather extreme stance, because I definitely don't, but I think it's an…
jdupuis | March 2, 2010Continuing the ongoing discussion about the publication habits of computing researchers that I've recently blogged about:
Time for computer science to grow up?
ACM responds to the blogosphere
The Association for Computing Machinery on Open Access.
Conferences vs. journals in computing research
This time around, we have Moshe Vardi Revisiting the Publication Culture in Computing Research in the latest Communications of the ACM.
The May 2009 editorial and the August 2009 column attracted a lot of attention in the blogosphere. The reaction has been mostly sympathetic to the point of view…
jdupuis | February 22, 2010Here's what they're about:
The first draft of Panton Principles was written in July 2009 by Peter Murray-Rust, Cameron Neylon, Rufus Pollock and John Wilbanks at the Panton Arms on Panton Street in Cambridge, UK, just down from the Chemistry Faculty where Peter works.
They were then refined with the help of the members of the Open Knowledge Foundation Working Group on Open Data in Science and were officially launched in February 2010.
Here they are:
Science is based on building on, reusing and openly criticising the published body of scientific knowledge.
For science to effectively function…
jdupuis | February 16, 2010As a follow up to my previous posts about the situation at Canada's national science library, NRC-CISTI, here, here and here, this was in the Ottawa Citizen today, NRC to lay off 86 workers in April.
The National Research Council is laying off 86 people as part of cuts announced last year to reduce costs at the country's leading research organization.
The layoffs begin in April and will affect employees at the Canada Institute for Scientific and Technical Information (CISTI), the country's national science library and leading publisher of scientific information. By the time it is over, CISTI…
ddobbs | February 14, 2010
I profiled neuroscientist Eric Kandel for Scientific American Mind a while back; a huge pleasure. Two things stand out.
First, Kandel's work makes a wonderful foundation for an understanding of neuroscience, as his mid-20th-century insights into the dynamics of memory underlie much of the discipline.
Second, Kandel is a gas -- gracious, funny, and stunningly brilliant. When I interviewed him for about 90 minutes in his office at Columbia, he was 73. As he described to me the history of his work, and of modern neuroscience, he seemed to have complete and effortless recall about…
ddobbs | January 26, 2010
Above: Kasparov after his first meeting with Deep Blue, in 1997, when he crushed DP. Later it wouldn't go so well.
In a splendid article in the NY Review of books, former world chess champion Gary Kasparov ponders the limitations of technology as a means of playing chess truly well. When I hit this paragraph late in the article, it struck me that you could write much the same thing about pharma. From The Chess Master and the Computer - The New York Review of Books:
Like so much else in our technology-rich and innovation-poor modern world, chess computing has fallen prey to incrementalism…
jdupuis | January 14, 2010Following along in the tradition of Bora's introductions of the various attendees for the upcoming Science Online 2010 conference, I thought I'd list all the library people that are attended. I'm not going to try and introduce each of the library people, I'll leave that to Bora, but I thought it might be nice to have us all listed in one place.
I did a quick list in my post a while back, but I revisited the attendee list after it closed and noticed a couple of people that weren't in the first list.
As I said in the earlier post, there's been a good tradition of librarians and library people…
jdupuis | January 13, 2010I was chatting with a colleague during the long commute home the other day and he noticed I was reading this book. "What's it like?" he asked.
"Clay Shirky lite," I replied.
And that's about right. In Six Pixels of Separation, Mitch Joel comes to grips with the effects of social media on marketing, media, sales and promotions, he covers a lot of the same ground as in Clay Shirky's classic Here Comes Everybody (review). Glib, conversational, fast-paced bite-sized -- an easy read for sure -- Joel does a solid job of translating Shirky's more scholarly approach to a business audience.
Which…
ddobbs | December 22, 2009via Wall Street Journal Health Blog:
For a while now, the FDA and other regulators have been looking at safety risks associated with a few drugs patients sometimes take before getting MRI scans.
While it's common for new risks to crop up with established drugs, the Times of London this weekend highlighted an interesting twist in this case: GE has filed a libel suit in Britain against a Danish radiologist who gave a talk about the risks associated with Omniscan, a GE drug that's one of the medicines regulators have been looking at.
The doctor, Henrik Thomsen, gave a presentation to about 30…
ddobbs | December 21, 2009
Note: The version below is altered from the original, which was near-gibberish in a few spots. Why? Because I mistakenly posted a pre-edit version that contained the raw 'transcription' from voice-recognition software I've been trying out. (I suppose it could have been a lot worse.)
Here, more or less as I meant it to appear:
Kevin Dunbar is a researcher who studies how scientists study things -- how they fail and succeed. In the early 1990s, he began an unprecedented research project: observing four biochemistry labs at Stanford University. Philosophers have long theorized about how…
ddobbs | December 18, 2009
I wanted to rig up an electrified fence around the falsehood to keep the producers from sneaking back to it
via blogs.discovermagazine.com
Carl Zimmer on just how damned bad much science TV is. I've not advised programs, as Carl has, but the times I've seen subjects I'd written about covered on TV -- DBS for depression, and Williams syndrome, which I'd written about for the Times Mag and both of which were subsequently covered by 60 MInutes -- the TV results were truly appalling. And that was the hallowed supposedly best-of TV 60 Minutes.
It's nice when you see it done better. Too bad it's…
ddobbs | December 17, 2009At the ScienceOnline 2010 conference next month, I'm going to be on a panel about "Rebooting Science Journaiism," in which I'll join Carl Zimmer, Ed Yong, and John Timmer in pondering the future of science journalism. God knows what will come of it, as none of us have the sure answers. But that session, as well as the entanglement of my own future with that of science journalism, has me focused on the subject. And two recent online discussions about it have piqued my interest.
One was the reaction, on a science writer's email-list I'm on, to a recent Poynter interview with Times science…
jdupuis | December 15, 2009A selection of articles from two recent IEEE publications which have special issues devoted to humanitarian service in engineering. Note that most of these articles will be behind the IEEE paywall.
IEEE Transactions on Professional Communication, v52i4.
The Role of Information and Communication in the Context of Humanitarian Service by Haselkorn, M; Walton, R
Adapting to Change: Becoming a Learning Organization as a Relief and Development Agency by Smith, S.; Young, A.
Listening as a Missing Dimension in Engineering Education: Implications for Sustainable Community Development Efforts by…
ddobbs | December 9, 2009Over at the Times Magazine Motherlode blog, Lisa Belkin ran a short post about my Atlantic "Orchid Children" piece a couple days ago, and some of the responses she got strike to an issue that has come up quite a few other places. I posted a note on this at Motherlode, and wanted to expand on it a bit here as well. This is the first what may be several posts of the "FAQ" sort examining reader or blogger concerns.
In this case, the concern dominating the Motherlode commenter thread responses, and in a few other places as well, is whether the "Orchid Children" of my title are what many people…
ddobbs | December 7, 20091. Maybe it was just the headline ... but the runaway winner was "No pity party, no macho man." Psychologist Dave Grossman on surviving killing. Actually I think it was the remarkable photo, which looks like a painting. Check it out.
2. I'm not vulnerable, just especially plastic. Risk genes, environment, and evolution, in the Atlantic. The blog post about the article that led to the book.
3. Senator Asks Pentagon To Review Antidepressants
4. Gorgeous thing of the day: Sky's-eye view of the Maldives & other islands
5. The Weird History of Vaccine Adjuvants, even though it was from Oct 1…
ddobbs | December 7, 2009
I'm happy to announce that Houghton Mifflin Harcourt, publisher of many a fine book over the decades, will be publishing "The Orchid and the Dandelion" (working title), in which I'll explore further the emerging "orchid-dandelion hypothesis" I wrote about in my recent Atlantic story. (In brief, that hypothesis -- a simple but deeply transformative amendment of current views -- hoids that many 'risk genes' for behavior and mental problems magnify not just maladaptive responses to bad environments but advantageous responses to good environments. That is, these "risk genes" confer not just…
ddobbs | November 12, 2009
Hardly a day passes without yet another breathless declaration in the popular press about the relevance of neuroscientific findings to everyday life. The articles are usually accompanied by a picture of a brain scan in pixel-busting Technicolor and are frequently connected to references to new disciplines with the prefix "neuro-". Neuro-jurisprudence, neuro-economics, neuro-aesthetics, neuro-theology are encroaching on what was previously the preserve of the humanities. Even philosophers - who should know better, being trained one hopes, in scepticism - have entered the field with the…
ddobbs | November 6, 2009
Posted via web from David Dobbs's Somatic Marker
The Maldives, featured in a Wired gallery of islands shot from space. A place crucial to the story I told in Reef Madness: Charles Darwin, Alexander Agassiz, and the Meaning of Coral. It was in this unique archipelago that Alexander Agassiz found the evidence he felt proved beyond doubt that Darwin's theory of coral reef formation was wrong, dead wrong. It's also a singularly beautiful place, and particularly threatened by global warming.