A little something we picked up at a John Yates seminar

For those who don't know, John Yates is one of the most important mass spec (or "proteomics") guys out there (i.e. applying mass spectrometry to identify what protein you are analyzing). He developed tandem mass spec and is at the forefront of new technologies in this area. Yesterday he was in the Longwood area where he gave a seminar on the latest stuff coming out of his lab. The talk was OK, it would have been better if I was a mass spec guy as much of the talk was focused on the technology and how it has been used to probe biology ... rather than the biology itself. But I'd like to share with you an amusing little intro slide. One of the main goals in biology, is to figure out the molecular mechanisms that contribute to various cellular processes. But how to get at the molecules (i.e. proteins)?

John Yates had a whimsical list of approaches (the first three were attributed to a certain professor Pollard, but we're quite sure it wasn't Tom Pollard of Yale):

The Casablanca approach: round up the usual suspects - make an educated guess.

The Lampost approach: look where the light is brightest - do the easiest search, like spot your RNA transcripts on an Affymetrix chip.

The Department of Transportation approach: search everyone - analogous to mass spec.

Magical inductionalism: do enough random experiments and maybe the answer will appear.

Tags

More like this

I had the good fortune on Thursday to hear a fascinating talk on deep transcriptome analysis by Chris Mason, Assistant Professor, at the Institute for Computational Biomedicine at Cornell University.  Several intriguing observations were presented during the talk.  I'll present the key points…
I haven't been blogging that much recently ... well to be honest I've had too much work to do. But as time goes on my ability to cope with the rich experience of daily lab life requires me to rant every so often. So here is today's rant. There are two approaches to small biology, studying…
Yes still in Italy. Looking back at this post, it looks like most of the small biologists (excluding structural biologists) who practiced the molecule-centric approach have been weeded out by the stagnation in NIH funding, but I still beleive that the temptation to perform such research is still…
Well last night I was invited to dine at Clio's with our Seminar Speaker, James Manley and some of the local transcription gurus, Kevin Struhl, Danesh Moazed, Steve Buratowski and Miriam Bucateli, a postdoc in the Buratowski lab. Unfortunately Dr. Manley had to leave early to catch a flight back to…