Restating the obvious

Yesterday a short notice was printed in the journal Science describing where Tyrannosaurus fell in relation to birds on the basis of molecular evidence (i.e. proteins recovered from a Tyrannosaurus femur). Surprise, surprise, the study found that Tyrannosaurus is more closely related to birds than the American alligator or the green anole lizard. Not everything came out perfectly, however. The phylogenetic tree created by the molecular data but Tyrannosaurus in the same group as the birds, meaning that (in the words of the authors) it "leaves Dinosauria unresolved."

An even more obvious error involved the placement of the anole, the tree placing it as a sister group to mammals and archosaurs. Mistakes like this have brought the utility of such molecular studies into question, and as Thomas Holtz commented in a New Scientist article about the research "I could do a hell of a lot better with bones." Sure, it is really cool that protein gathered from preserved collagen from a Tyrannosaurus has been recovered and the extremely ancient proteins can still yield results that approximate what was already known from morphology, but I would have liked to have seen something a little more complete and rigorous than what was printed in Science.

Even if the study suffered some problems, however, it did support the fact that Tyrannosaurus and birds are more closely related to each other than either is to crocodylians. The problem is that the results can easily be misconstrued by mass media outlets, making it look like Tyrannosaurus was the ancestor of birds! The New Scientist article, for instance, is titled "T. rex confirmed as great granddaddy of all birds." NO! Even though it used to be grouped with other large predatory dinosaurs like Allosaurus, we now know that Tyrannosaurus was a huge coelurosaur, the group coelurosauria containing tyrannosaurs, ornithomimosaurs, and maniraptors, birds being contained within the maniraptora. This makes Tyrannosaurus an evolutionary cousin that shared a common ancestor with the group of dinosaurs that evolved into birds, not that it was a bird ancestor itself.

[Update: The title of the New Scientist article has now been changed, see the comment below.]

The body of the article is a tiny bit better, saying "Tyrannosaurus rex, meet the chicken - your third cousin more than 100 million years removed," but the real relationship between Tyrannosaurus and birds (as well as the true ancestors of birds) is not mentioned at all. This is frustrating to those who know better, but it also shortchanges people who aren't familiar with the present state of the science. When I was first trying to educate myself about what dinosaurs had to do with the origins of birds, popular news reports usually confused more than they helped, making it seem like dinosaurs like Velociraptor were the ancestors of birds rather than being creatures that helped confirm that birds are derived maniraptoran dinosaurs. If popular press articles aren't going to provide the proper context, confusion among the public and non-specialists will likely continue.

From what I understand more studies of the proteins recovered from the Tyrannosaurus collagen are planned, although we'll all have to wait and see what the nature of those studies are. In terms of evolutionary relationships, though, the new Science report is a drop in the bucket that compliments the flood of fossil evidence that confirms that birds are living dinosaurs.

References;

Organ, C.L., Schweitzer, M.H., Zheng, W., Freimark, L.M., Cantley, L.C., Asara, J.M. (2008). Molecular Phylogenetics of Mastodon and Tyrannosaurus rex. Science, 320(5875), 499-499. DOI: 10.1126/science.1154284

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Well, I think the most damning thing against this study is the anole being somehow related to my dog. I think a giant whoops like that calls into question the T.rex-bird link. I mean, obviously, T.rex IS related to birds, but you get my meaning. The study ITSELF cannot manage to resolve such a relationship tidily.

Dr. Holtz is right.

Thanks!

Actually, I went on to say (but it didn't get into the article) that at least SOME signal is getting through: Mammut didn't wind up with the fish Danio, or Tyrannosaurus next to humans.

And then there is the issue of protein trees vs. species trees and such.

But mostly I think the actual Science paper was trying to counter the hypothesis that their Tyrannosaurus material was all contaminants.

I think the real reason this paper is Science-worthy is that it proves that the recovered soft tissue is 100% Real Dino!

Until it was shown that the material was not just contaminents. Remember the '95 Science story that reported dino DNA.... where the researchers were confused by it resolving phylogenetically in the protists?

This result means PALEONTOLOGISTS, START YOUR ENGINES! Further work of this kind will reveal better details and a more complete reconstruction of dino evolution.

I think the point of this study is being missed. This is not a study exploring the phylogeny of elephants or bird/dinos. It is a study demonstrating the viability of very ancient bio-molecules, using an obvious phylogeny.

"Our findings suggest that molecular data from long-extinct organisms may have the potential for resolving relationships at critical areas in the vertebrate evolutionary tree that have, so far, been phylogenetically intractable."

Perhaps part of the reason why I was somewhat critical of this new short communication was because it didn't seem to show anything new. Perhaps I missed something, but last year media outlets ran almost the same story about the molecular data being accurate. If the veracity of last year's results were in doubt, I hadn't heard, so the new paper seemed like a restatement of what had already been established (which isn't to say that the proteins should not be continually tested).

Even if I missed the point, I really wasn't impressed with what else was in the communication. The reality that the molecular data could be used had already been established and the phylogenetic tree was poor (i.e. why the heck did the anole wind out way out of place?), so I just don't really see the point of it. If the purpose of the study was to show that ancient molecular data can still be useful, I would have liked to see something more in-depth.