biology

Who could forget the second most popular blog post so far this year. Seeing an octopus walk never gets old! ------- I came across this amazing video on YouTube showing a species of octopus found in Northern Australia that is adapted to walk on land:
Last week, an antivaxer "challenged" me to look over a paper purporting to show that aluminum adjuvants in vaccines cause inflammation of the brain and therefore contribute to autism, a paper that she would be "citing frequently." Being someone who lives by the motto, "be careful what you wish for," I looked it over in detail. Not surprisingly, my conclusion was that the experiments were poorly done using obsolete and not very quantitative methodology and that the results do not support the conclusions made by the authors. I was not alone in this conclusion. Skeptical Raptor was, if anything…
  "Why, oh, why do I have to die in the cause of such crappy science?" For antivaxers, aluminum is the new mercury. Let me explain, for the benefit of those not familiar with the antivaccine movement. For antivaxers, it is, first and foremost, always about the vaccines. Always. Whatever the chronic health issue in children, vaccines must have done it. Autism? It’s the vaccines. Sudden infant death syndrome? Vaccines, of course. Autoimmune diseases? Obviously it must be the vaccines causing it. Obesity, diabetes, ADHD? Come on, you know the answer! Because antivaxers will never let go of…
For nearly as long as I can remember, I've been a fan of Jeopardy! Indeed, if I'm at home at 7:30 PM on a weeknight, Jeopardy! will usually be on the television. Given that, I remember what was basically a bit of stunt programming in 2011, when Jeopardy! producers had IBM's artificial intelligence supercomputer Watson face off against two of the most winning champions in the history of the show, Ken Jennings and Brad Rutter. Watson won, leading Jenning's to add to his Final Jeopardy answer, "I, for one, welcome our new computer overlords." Watson's next challenge was similarly highly hyped:…
I've caught a fair amount of flak over my opposition to so-called "right-to-try" laws. Right-to-try laws have proliferated throughout the US like so much kudzu over the last three and a half years, to the point where 37 states now have some version of these profoundly anti-patient laws on the books. At the federal level, three weeks ago the Senate passed a federal version of right-to-try, with the House scheduled to take up the bill when Congress returns from recess next week. Granted, it's watered down and therefore less horrible than the original version, which Senator Ron Johnson (R-WI_…
“Man has gone out to explore other worlds and other civilizations without having explored his own labyrinth of dark passages and secret chambers, and without finding what lies behind doorways that he himself has sealed.” -Stanisław Lem One of the questions that’s fascinated humanity since we first began looking up at the night sky is whether or not we’re alone in the Universe. Although we now know of other stars, other planets, and potentially inhabited worlds, we have yet to make contact with another intelligent species. Despite our curiosity, a great many people live in fear that if we did…
"An extrapolation of the genetic complexity of organisms to earlier times suggests that life began before the Earth was formed. Life may have started from systems with single heritable elements that are functionally equivalent to a nucleotide." -Alexei A. Sharov & Richard Gordon We talk about the origin of life on Earth with bated breath, wondering all the time how things occurred to make our planet unique. But within that big question lies an assumption that may not be true: that life on Earth originated on Earth itself. It’s entirely possible, based on what we’ve seen out there in the…
Over the last two or three weeks, you might have noticed a disturbance in the alternative medicine force. Unlike disturbances in the Force in Star Wars movies (which usually result from horrors like the obliteration of millions of lives on Alderaan), this was a joyous, celebratory disturbance in the mystical nonexistent energy fields in which promoters of alternative medicine cancer cures and haters of chemotherapy and "conventional" cancer treatment (the two almost always go together) thought that a major study in a reputable journal had put yet another "final nail in the coffin of…
“If I had to describe myself to an alien I’d say I was bigger than the average human, enjoy a drink or two with a good meal and have a bigger head than most. I’d also say I’m really handsome — especially if they were a female alien.” -Dwayne Johnson The Earth, to the best of our knowledge, is the only inhabited world we have. The ingredients for life may be everywhere, from asteroids to nebulae to exoplanets and more, but so far, only Earth is confirmed to have life. While Earth-like planets around Sun-like stars at the right distance for liquid water on their surface might seem like the best…
Palaeobotanist Jennie Andersson has analysed four soil samples for me, all from floor layers inside buildings at Medieval strongholds that me and my team have excavated in recent years. There's one each from Stensö, Landsjö, Skällvik and Birgittas udde. Results were sadly not very informative. Comments Jennie: "Overall the fossil and carbonised botanical material in the samples, as well as the recent unburnt material, is meagre … No carbonised cereals were found. Three of the four samples did however contain rather large amounts of unburnt bones and scales from fish plus jurpa, a blanket term…
Supported by a grant from the King Gustavus Adolphus VI Foundation For Swedish Culture, osteologist Lena Nilsson has analysed the bones we collected during excavations last year at two Medieval strongholds. Two weeks with 19 fieldworkers at Birgittas udde produced only 0.4 kg of bones, because the site has no culture layers to speak of and the sandy ground has been unkind. But from the following two weeks at Skällvik Castle we brought home 32.7 kg of bones! And now Lena has looked at them all. Here are her reports: Birgittas udde 2016 Skällvik Castle 2016 The reports are in Swedish, but the…
"They say once you grow crops somewhere, you have officially 'colonized' it. So technically, I colonized Mars. In your face, Neil Armstrong!" -Andy Weir In the early 1960s, humanity began launching spacecraft to Mars, hoping to find out what the red planet was truly like. While early images revealed a heavily cratered surface, similar to that of the Moon, that turned out to be reflective of only a portion of the surface. Mars contains dust storms, basins, extinct volcanoes and the largest chasm of any planet in the Solar System. A dust storm on Mars, a common occurrence during the Martian…
"Aha! That satellite was scuttled on Enceladus, Saturn's main dump moon!" -Professor Farnsworth, Futurama When you think about life beyond Earth, you likely think of it occurring on a somewhat Earth-like planet. A rocky world, with either a past or present liquid ocean atop the surface, seems ideal. But that might not even be where life on Earth originated! Deep beneath the Earth’s surface, geologically active hydrothermal vents currently support diverse colonies of life without any energy from the Sun. Saturn’s icy moon, Enceladus, has a subsurface ocean unlike any other world we’ve yet…
[Orac note: A combination of power outages, travel to Seattle, and trying to write something for my not-so-super-secret other blog conspired to leave me with nothing for this morning. So I thought I'd resurrect this old gem, which hasn't been reposted in at least four years. I actually did try to remove the dead links (this post dates back nearly 12 years in some form or another), but I probably missed a couple. I also changed the post a little, just to remove clearly outdated stuff. In the mean time, be assured that, with no more travel planned and our power restored, things should get back…
Among quacks, epigenetics is the new quantum theory. I know I've said that before, but it's worth saying again in response to a new quack I've just discovered, courtesy of an article in The Daily Mail Fail by one Dr. Sara Gottfried pimping her books and health empire, From taking a sauna to drinking pinot noir, a fascinating book by a hormone doctor reveals how to... switch off your bad genes and live longer. Epigenetics. She's talking about epigenetics. Of course, she keeps using that word. I do not think it means what she thinks it means. Indeed, if what's in this article is a taste of what…
"Laws of nature mixed with evolutionary/historical contingencies allow for a range of diversity... [t]hat diversity, within the laws of nature, when I step back a bit from the desk or the computer, still surprises me to no end." -Adrian Lenardic When it comes to the habitability of a planet, there are a lot of assumptions that we make. All of them boil down to, at some level or other, how Earth-like this world is. This is reflected in our language: terms like “super-Earth” or “habitable zone” showcase this inherent bias. Yet the vast majority of stars that are out there aren’t Sun-like, and…
About a week ago, I happened upon a number of stories about a study and project that demonstrates a key difference between science and pseudoscience. They had titles like, "Rigorous replication effort succeeds for just two of five cancer papers" (Science), "Cancer reproducibility project releases first results: An open-science effort to replicate dozens of cancer-biology studies is off to a confusing start" (Nature), and "What Does It Mean When Cancer Findings Can't Be Reproduced?" (NPR). Basically, these stories all reference a review of the initial results of the Reproducibility Project in…
“There is a voice inside of you That whispers all day long, ‘I feel this is right for me, I know that this is wrong.’” -Shel Silverstein When it was first proposed in 1973 by Brandon Carter, there were only two simple statements that one could hardly disagree with concerning the anthropic principle: 1.) We must be prepared to take account of the fact that our location in the Universe is necessarily privileged to the extent of being compatible with our existence as observers. 2.) The Universe (and hence the fundamental parameters on which it depends) must be as to admit the creation of…
“It's so easy to become a grumbler, someone who condemns and carps at everything on principle and sees an ulterior motive behind it.” -Eric Metaxas If we find out that we truly are alone in the Universe, whether there’s no other life, intelligent life, or spacefaring life, there’s no doubt that makes us special. But does that make us divinely chosen? Or, even more to the point, does that mean that the Universe was designed to give rise to human beings; with us in mind as the end goal? That isn’t necessarily a question we can know the answer to, but it’s something we can approach with science…
"Far out in the uncharted backwaters of the unfashionable end of the western spiral arm of the Galaxy lies a small unregarded yellow sun. Orbiting this at a distance of roughly ninety-two million miles is an utterly insignificant little blue green planet whose ape-descended life forms are so amazingly primitive that they still think digital watches are a pretty neat idea." -Douglas Adams If you want to know how many and what type of chemical elements are present in a star system, you need to make a dizzying, intricate array of observations. You need to break up the light from the star into…