journal club

tags: researchblogging.org, evolution, flatfish, Amphistium, Heteronectes, transitional fossils, missing link, Matt Friedman During the development of extant flatfishes, such as this plaice, Pleuronectes platessa, one eye has migrated round the head to lie on the same side as the other. So these fishes have an 'eyed' (up) side and a 'blind' (down) side suitable for their bottom-dwelling lifestyle. Image: KÃ¥re Telnes. Flounder, turbot, sole, halibut and plaice (pictured above) are more than just a tasty slab of flesh on your plate. They are flatfishes that spend their adult life lying…
tags: researchblogging.org, female scientists, science publishing, double-blind review, single-blind review, cultural observation, gender bias, sexism, feminism A microbiologist at work. Image: East Bay AWIS. A few months ago, a controversy occurred in the blogosphere regarding whether scientific papers whose first author is female are discriminated against during the peer-review process, and the suggestion was to institute double-blind peer review as a way to mitigate this possibility. "Double-blinding" as this is sometimes referred to, is a process where a manuscript that has been…
tags: researchblogging.org, endangered species, estimating extinction risk, demographic heterogeneity, demographic stochasticity, environmental stochasticity, Mechanistic stochastic models, Brett Melbourne The endangered pelagic thresher shark, Alopias pelagicus. More than half of the world's shark species are under the threat of extinction due to overfishing by humans, especially for sharkfin soup. Image: Kevin Markey, 2004 (Pacific Shark Research Center). The International Union for Conservation of Nature (IUCN) released a report in 2007 indicating that more than 16,000 animal species…
tags: researchblogging.org, global warming, climate variation, climate change, penguins, El Nino, marine zoning, P. Dee Boersma Adélie penguins, Pygoscelis adeliae, and chicks. (a) Adélie penguin chicks may get covered in snow during storms, but beneath the snow their down is warm and dry. (b) When rain falls, downy Adélie chicks can get wet and, when soaked, can become hypothermic and die. Images: P. Dee Boersma. According to an article that was just published in the journal BioScience, penguin populations are declining sharply due to the combined effects of overfishing and pollution…
tags: researchblogging.org, Early Bird Project, Tree of Life, avian evolution, deep avian evolutionary relationships, avian phylogenomics, location cues, Shannon J. Hackett, Rebecca T. Kimball, Sushma Reddy Basic topology of the evolutionary relationships between birds. Maximum Likelihood (ML) phylogram reveals the short internodes at the base of Neoaves and highlights certain extreme examples of rate variation across avian lineages. The phylogenetic tree was rooted to crocodilian outgroups (not shown). Branch colors represent major clades supported in this study: land birds (green),…
tags: researchblogging.org, Black-throated Blue Warbler, Dendroica caerulescens, social information, habitat selection, vegetation structure, location cues, dispersal, Matthew G Betts Male Black-throated Blue Warbler, Dendroica caerulescens, with nestlings. Image: S. Maslowski, USFWS [larger view]. Wild songbirds must be able to quickly discriminate between different habitats so they can choose and establish a suitable breeding territory. Since even older, experienced breeding songbirds lose roughly 50% of their chicks to predators, even a small mistake in choosing a breeding territory…
tags: researchblogging.org, scientific ethics, Hippocratic oath, life scientists, corporate culture I promise never to allow financial gain, competitiveness or ambition cloud my judgment in the conduct of ethical research and scholarship. I will pursue knowledge and create knowledge for the greater good, but never to the detriment of colleagues, supervisors, research subjects or the international community of scholars of which I am now a member. Scientific misconduct is very expensive, leading to years of wasted research dollars and effort in pursuit of a scientific mirage, and it damages the…
tags: researchblogging.org, quaternary ammonium compounds, fertility problems, repoductive problems, zoos, aviculture, medicine, disinfectants I know a fair number of zoos and aviculturists who disinfect the premises occupied by their breeding flocks of birds with quaternary ammonium compounds to prevent the spread of diseases, especially viral disease. But according to a story that just appeared in the top-tier journal, Nature, exposure to the quaternary ammonium compounds, ADBAC (n-alkyl dimethyl benzyl ammonium chloride) and DDAC (didecyl dimethyl ammonium chloride), could cause a sharp…
tags: researchblogging.org, phylogeny, British birds, population decline, range contraction, Gavin H Thomas An adult male Eurasian blackbird, Turdus merula. Image: Wikipedia commons [larger view]. A paper recently published by British scientist, Gavin Thomas, a population biologist at Imperial College London, finds that British bird species that currently are suffering population declines tend to be close relatives of each other. The reason is obvious: closely related species tend to share many traits, such as very precise habitat requirements, and what's bad for one species is also bad…
tags: evolution, beak and body size, Geospiza fortis, inbreeding, mating patterns, reproductive isolation, sexual imprinting A family tree depicts the evolution of the 14 species of "Darwin's finches". (The focus of this study, the Medium Ground Finch, Geospiza fortis, is denoted with a red dot). [larger image]. I have always been fascinated by the process of speciation throughout my scientific career because speciation is the "engine" that generates biological diversity. But what are the evolutionary mechanisms that lead to speciation? We know that mate choice can be one important…
tags: researchblogging.org, evolution, experimental evolution, adaptation, mutation, natural selection, Richard E. Lenski The common gut bacteria, Escherichia coli, typically known as E. coli. Image: Dennis Kunkel. Evolution is a random process -- or is it? I ask this because we all can name examples of convergent evolution where very different organisms arrived at similar solutions to the challenges they are faced with. One such example is the striking morphological similarities between sharks (marine fishes) and dolphins (marine mammals). Thus, based on observations of convergent…
tags: researchblogging.org, psychology, trauma, emotions, 9-11, psychological health To talk or not to talk, apparently that is the question, especially after a collective catastrophe, such as 9-11 or the Virginia Tech University shootings. A paper that will be published in the June issue of Journal of Consulting and Clinical Psychology reveals that -- contrary to current opinion -- verbally expressing one's emotions is not necessary to cope successfully with a community tragedy, and in fact, doing so might actually be harmful. Expressing one's emotions in the aftermath of a community…
tags: researchblogging.org, Aves, Psittaciformes, Pseudasturidae, parrots, Palaeogene, Eocene, Denmark An artist's impression of the parrot-like bird, Mopsitta tanta, dating back 55 million years. The fossils indicate that parrots once flew wild over what is now Norway and Denmark. Image: David Waterhouse [larger view]. A team of researchers, including a former postdoctoral colleague of mine, recently described fossils from two Lower Eocene parrot-like birds that were discovered in Denmark. The analysis of the fossils reveals that one of the ancient parrots, named Mopsitta tanta, is the…
tags: researchblogging.org, evolution, dinosaurs, birds, Tyrannosaurus rex, ornithology, paleontology The Tyrannosaurus rex femur from which researcher Mary Higby Schweitzer of North Carolina State University recovered soft tissue. Image: Science. It wasn't too long ago that paleontologists thought that fossilization was a process where all biological material was replaced with inert stone. However, in 2005, Mary Higby Schweitzer of North Carolina State University rocked the paleontological world when she recovered a still-elastic blood vessel from inside a fractured thigh bone fossil of a…
tags: researchblogging.org, evolution, speciation, Pod Mrcaru lizard, Podarcis sicula, reptiles Pod Mrcaru lizard, Podarcis sicula. Image: Anthony Herrel (University of Antwerp) [larger view] Evolution has long been thought to occur slowly, due to small and gradual genetic changes that accumulate over millions of years until eventually, a new species arises. However, recent research has been calling this assumption into question. According to a study that was just published by an international team of scientists, dramatic physical changes can occur very rapidly -- on the order of just 30…
tags: researchblogging.org, dog walking, wild birds, ground-nesting birds, conservation, peer-reviewed research Dog walking in natural areas harms wild birds, according to recently published research. Millions of people walk their dogs every day, and many of them enjoy walking their dogs in natural areas where birds and other wild animals live. Unfortunately, a scientific paper was recently published showing that the presence of dogs, even when they are on a leash in these natural areas, seriously interferes with wild birds' reproductive success and even scares many of them away. This…
tags: researchblogging.org, birds, aves, ornithology, Zosterops somadikartai, Togian white-eye, Indonesia, Sulawesi An undated artist's rendering of Zosterops somadikartai, or Togian white-eye. This small greenish bird that has been playing hide-and-seek with ornithologists on a remote Indonesian island since 1996, but was declared a newly discovered species on March 14, 2008 and promptly recommended for endangered lists. Image: Agus Prijono. Sharp-eyed scientists have discovered a new species of bird on a remote Indonesian archipelago in the Southern Pacific Ocean. A formal description…
tags: researchblogging.org, bipolar disorder, clinical depression, mental illness, mood disorder, functional genomics, blood test, biomarkers Image: Florida Department of Law Enforcement. According to the United States Department of Health and Human Services, serious mental illnesses affect approximately 44 million Americans. Serious mental illnesses include mood disorders; depression and bipolar disorder. Unfortunately, correctly diagnosing mental illnesses, such as bipolar disorder, appears to be a sort of voodoo science that depends upon the skill of the mental health professional…
tags: researchblogging.org, endocrine disruptors, environmental pollutants, DDT metabolites, dichlorodiphenyltrichloroethane, birdsong, physiology, behavior European Starling, Sturnus vulgaris. Image: Gerd Rossen [larger view]. An elegant but disturbing paper was just published that documents that biologically relevant concentrations of endocrine disrupting pollutants are affecting the quality and quantity of song produced by male songbirds, which in turn, influences female mate choice. According to the research team, not only do these pollutants influence behavior, but they also affect…
tags: researchblogging.org, climate change, global warming, oceanic dead zones, west coast, North America, Oregon state, Washington state Millions of dead crabs are washing up onto Oregon and Washington state beaches from the offshore "dead zone". Ever since it was first noticed by crab fishermen who hauled up hundreds of dead and dying crabs in 2002, the "dead zone" that popped up in the waters along the northwestern coastal shelf just off the coast of Oregon has claimed unknown millions of lives. This oxygen-depleted region has transformed formerly rich seafloor communities teeming with…