Old friends, new tools

Once upon a time, way back when I entered graduate school, the first big project I was involved in was essentially a morphological mapping of the circuitry of the larval zebrafish. We did lots of backfills of neurons with horseradish peroxidase, and later the fluorescent dye DiI, and then with injected lineage tracers like rhodamine dextran. I guess technology has greatly advanced, because we never got anything as pretty as this set of fluorescently labeled neurons in the brain and spinal cord of a larval zebrafish.

This image was made using brainbow fluorescent microscopy. Transgenic fish carry an assortment of fluorescent protein genes that are randomly flipped on in the cells to produce these multicolored views of a subset of the neurons. It's like the good old Golgi silver stain, only in technicolor.

Tags
Categories

More like this

Hippocampus: Broad Overview Tamily Weissman, Jeff Lichtman, and Joshua Sanes, 2005 from Portraits of the Mind: Visualizing the Brain from Antiquity to the 21st Century by Carl Schoonover The first time I created a transgenic neuron, it was in a worm, C. elegans -- a tiny, transparent cousin of the…
A paper by researchers from Princeton University, just published in the open access journal PLoS One, describes a new virus-based technique for probing the connections between neurons while simultaneously monitoring their activity in live animals. Various methods are available for studying the…
Neurulation is a series of cell movements and shape changes, inductive interactions, and changes in gene expression that partitions tissues into a discrete neural tube. It is one of those early and significant morphogenetic events that define an important tissue, in this case the nervous system,…
This article is reposted from the old Wordpress incarnation of Not Exactly Rocket Science. The blog is on holiday until the start of October, when I'll return with fresh material. At Harvard University, a group of creative scientists have turned the brains of mice into beautiful tangles of colour…

That would make a great space monster for the new ST movie :)

By John Phillips, FCD (not verified) on 18 Nov 2008 #permalink

Before reading any of the text, it totally looked like like a (sideways) elephant. Still fantastic, but a part of me is still wishing it were an elephant.

That's art, that is.

By Ben Hardy (not verified) on 18 Nov 2008 #permalink

"Old Friends, New Tools"...

...that's what I said when my friends from high school joined fraternities in college.

>we never got anything as pretty as this set of fluorescently labeled neurons in the brain and spinal cord of a larval zebrafish.

With two strategic contractions that haikus quite elegantly (to me, anyway, my apologies):

Fluor'scently label'd
Neurons, brain, and spinal cord
Larval zebrafish.

Neat. I'd heard about the appallingly named "brainbow" about a year ago (on a Nature podcast), but I'd never actually seen an application.

horseradish peroxidase

Not to be confused with paradimethyl honey mustard.

i I'll get my coat.

By 'Tis Himself (not verified) on 18 Nov 2008 #permalink

Just saw this same image yesterday at the SFN meeting in DC. Josh Sanes gave a talk basically describing the development of Brainbow and its applications, which are admittedly few at the moment. Still, impressively beautiful pictures, and really cool science behind the development of the technique.

Have you neuroscientists no moral sense? First you hi-jack Gods handi-work in creating these so-called "trans-genic" fish, which is an obvious abomination, then you create these so-called "beautiful" images, obviously designed to draw in the minds of the youth of our nation in order to convert them to your materialist world view. Your whole "science" is only an effort to prove the non-existance of a soul by making "beautiful" sciency photographs of one of Gods' creatures only in an effort to deny Him as the final Cause. Also, too.

By S. Fisher (not verified) on 18 Nov 2008 #permalink

I understood horseradish.

Woody, if you think you understand horseradish, you don't understand horseradish

[/Feynman]

Just letting readers know that Andor Technology plc are running a competition for the scientific community. $400 to the charity of your choice, will be awarded for the winning entry in the 2008 Christmas Card design contest, plus the opportunity to promote your work on wwwandor.com - Check out:
http://www.youtube.com/watch?v=k85yzCSdhrc

I just wish I knew where I could get prints of some of those images, or even a calendar? Absolutely gorgeous stuff!

Holy Bejeebus! That's truly F'ing amazing!

Why does God use such squiggly lines? Surely there must be some "intelligent" reason for it.

Pdiff

Love fluorescent proteins. They're the best! Beautiful picture.

You know how it is when people feel sorry for you because you don't believe in a god and therefore have lost all your sense of wonderment and appreciation for the universe's beauty? This is the kind of picture I like to show them. What's really funny is that they then usually can't fathom MY excitement. I pity them.

By recovering catholic (not verified) on 18 Nov 2008 #permalink

@artemia: Great idea! Science and science education would have an additional funding source if those images were made into calendars, posters, t-shirts, coffee mugs.

! Science and science education would have an additional funding source if those images were made into calendars, posters, t-shirts, coffee mugs.

The images at Astronomy Picture of the Day are also pretty amazing.

By 'Tis Himself (not verified) on 18 Nov 2008 #permalink

The other pictures from that competition were pretty crazy fantastic, too.

Look at the first one. "Spike Walker" just has to be a pseudonym. Doesn't it?

I fail to understand how anyone could think that some guy called God is more interesting than that image and what the image is of (and how we know that this is an image of what it is, and how we captured that image). Oh, wait, I guess god-believers would simply say that this is evidence of that intelligent designer's intelligence..they see god everywhere except for where it would actually prove god's existence.

By Maybesomewinelater (not verified) on 18 Nov 2008 #permalink

That image reminds me of one of the few concepts I've retained from my biopsych classes: axons wiring up according to chemical gradients, or, as the prof called it, the "Lick 'n Sniff" approach. The cruder the mnemonic, the more effective it is...

Nice. I can see the eyes! :-)

label'd

Do you mean you normally pronounce the second e?!?

By David Marjanović, OM (not verified) on 18 Nov 2008 #permalink

I'm so going to make a demotivational poster of that.

(...And this is your Brainbow)

By Chris Davis (not verified) on 18 Nov 2008 #permalink

PZ
Just think of all of your peers and your own work which has contributed to this being the new standard. Fantastic. What will the next 30 years bring.

S Fisher.
I love sarcasm, keep it up you're doing just fine.

#25

Read S. Fisher's post again, especially the last two words. I think you've been poed.

By recovering catholic (not verified) on 18 Nov 2008 #permalink

Pareidolia tells me this is actually a futuristic electric car! vroom vroom

By TheThomas (not verified) on 18 Nov 2008 #permalink

I never bought this whole "atheists lack wonderment" thing. Where are awe and wonder for the theist? He believes that a being kinda like him made all this cool stuff to impress him. And there is no real wonder at all for the theist. "Goddidit" is the answer to everything.

Most theists I know who know I am an atheist rely on arguments that ultimately boil down to "If there's no God then how or why X?" They just don't understand how my "I don't know" is acceptable to me. Theists seem unable to tolerate wonder.

Of course, sometimes I do know. Once someone argued that the perfect squareness of the inverse square law of gravity was proof of God. I explained that it was a simple consequence of 3-D geometry. We looked up the formula for the surface area of a sphere and noted that the area increased directly with the square of the radius. I explained that at any given distance the effect of gravity was spread out over the surface of a sphere, If we doubled that distance, the gravity was spread out over a sphere four times larger, and thus was only 1/4th as strong. I also pointed out that cosmologists had recently discovered that on some scales gravity didn't seem to work exactly as an inverse square law. However, scientists had not generally abandoned the conventional law of gravity because of this. They proposed that there might be other forces at work, and that's what all this "dark energy" talk is about.

Ooh! This is exciting!

I work in a lab characterizing a novel gene, so naturally we've used some GFP. Turns out my gene is expressed in mitochondria, probably the last place we'd expect it!

All thanks to good ol' GFP.

I just gotta put me one of these on a quilt!!!

That and a spiral galaxy. But not together. Then again...

Thanks for the pictures PZ, these truly are stunning.

Recovering Catholic at #17, yup, they really just don't get it.

I'm going to show this one to the kidlets. Maybe even print it off to take to school. I'm hoping for shrieks of joy when we took them to the aquarium in Sydney.. my kids really do appreciate biological wonderments.

Yeah but it probably tasted better with the horseradish.

(Horseradish?!?)

@Dave H:
You want the horseradish?
You can't handle the horseradish!

I love this image, but I'd feel better about it if someone, somewhere wasn't thinking: "That's so cool! Now what if we did that to a blue whale and put it in the Christmas display at the mall?!"

that are randomly flipped on in the cells

That doesn't look particularly random to me.

(Thank you, spammer, nice spam. NOT!)